9kun

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Current revision (04:10, 14 September 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9kun is ON HOLD until Paper Publication
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==Crystal structure of ligand-free trypanosome alternative oxidase==
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<StructureSection load='9kun' size='340' side='right'caption='[[9kun]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9kun]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9KUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9KUN FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9kun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9kun OCA], [https://pdbe.org/9kun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9kun RCSB], [https://www.ebi.ac.uk/pdbsum/9kun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9kun ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AOX_TRYBB AOX_TRYBB] Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The glucose-dependent respiration of bloodstream forms of the parasite Trypanosoma brucei depends on an unusual and essential mitochondrial electron-transport system, consisting of glycerol-3-phosphate dehydrogenase and the trypanosome alternative oxidase (TAO). We report here the discovery of an allosteric inhibitor of TAO that displays highly potent activity (EC(50) values in the range 1-20 nM) against the important veterinary pathogens T. b. brucei, Trypanosoma evansi, Trypanosoma equiperdum, and Trypanosoma congolense, i.e., &gt;5-fold greater potency than the standard drugs. The methylene-linked 2-methyl-4-hydroxybenzoate 2-pyridinyldiphenylphosphonium derivative (1) was the best inhibitor of recombinant TAO (IC(50) = 1.3 nM) via a noncompetitive/allosteric mechanism (K(i) = 3.46 nM). Remarkably, X-ray crystallography showed that 1 was bound to a site of TAO approximately 25 A from the catalytic pocket. Although 1 demonstrated good safety toward mammalian cells in vitro (selectivity index &gt;2300), it did not fully clear parasitemia in experimental animals, attributable to a high hepatic clearance.
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Authors: Ebiloma, G.U., Balogun, E.O., Dardonville, C., Shiba, T., De Koning, H.P.
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Uncovering the Unusual Inhibition Mechanism of a Trypanosome Alternative Oxidase Inhibitor Displaying Broad-Spectrum Activity against African Animal Trypanosomes.,Ebiloma GU, Balogun EO, Arai N, Otani M, Baldassarri C, Alhejely A, Cueto-Diaz E, De Koning HP, Dardonville C, Shiba T J Med Chem. 2025 Aug 28;68(16):17155-17174. doi: 10.1021/acs.jmedchem.5c00631. , Epub 2025 Jun 4. PMID:40464345<ref>PMID:40464345</ref>
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Description: Crystal structure of ligand-free trypanosome alternative oxidase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Dardonville, C]]
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<div class="pdbe-citations 9kun" style="background-color:#fffaf0;"></div>
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[[Category: Balogun, E.O]]
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== References ==
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[[Category: Shiba, T]]
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<references/>
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[[Category: De Koning, H.P]]
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__TOC__
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[[Category: Ebiloma, G.U]]
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Trypanosoma brucei brucei]]
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[[Category: Balogun EO]]
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[[Category: Dardonville C]]
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[[Category: De Koning HP]]
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[[Category: Ebiloma GU]]
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[[Category: Shiba T]]

Current revision

Crystal structure of ligand-free trypanosome alternative oxidase

PDB ID 9kun

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