9m7f

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m (Protected "9m7f" [edit=sysop:move=sysop])
Current revision (04:13, 14 September 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9m7f is ON HOLD until Paper Publication
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==Crystal structure of AsDMS D333N mutant in complex with farnesyl pyrophosphate==
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<StructureSection load='9m7f' size='340' side='right'caption='[[9m7f]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9m7f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquimarina_spongiae Aquimarina spongiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9M7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9M7F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6000273&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FPP:FARNESYL+DIPHOSPHATE'>FPP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9m7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9m7f OCA], [https://pdbe.org/9m7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9m7f RCSB], [https://www.ebi.ac.uk/pdbsum/9m7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9m7f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A1M6CXF0_9FLAO A0A1M6CXF0_9FLAO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Terpene cyclases (TCs), consisting of various combinations of alpha, beta, and gamma domains, have been extensively studied. Recently, non-canonical enzymes comprising a TCbeta domain and a haloacid dehalogenase (HAD)-like domain (referred to as HAD-TCbeta) have been discovered. However, their overall structure remains unclear. In this study, we determined the co-crystal structures of drimenol synthase from Aquimarina spongiae (AsDMS), which catalyzes the conversion of farnesyl pyrophosphate (1) into drimenol (2). Crystallographic analyses of the enzyme bound to substrates 1 and drimenyl monophosphate (3) demonstrated that the TCbeta domain catalyzes a class II cyclization reaction initiated by protonation, whereas the HAD domain catalyzes a phosphatase-like dephosphorylation reaction dependent on a divalent metal. Crystallographic and gel filtration analyses revealed that AsDMS adopts a dimeric assembly. This dimerization positioned the TCbeta and HAD domains to facilitate efficient substrate transfer via electrostatic substrate channeling. Furthermore, to investigate the structure-function relationship of the AsDMS TCbeta domain, we used AlphaFold2 to model the structure of the fungal albicanol (4) synthase. Comparative analysis of active-site residues between AsDMS and fungal 4-synthase enabled rational protein engineering, converting AsDMS activity from 2-synthase to 4-synthase. This study provides insights into the biosynthesis of valuable drimane-type sesquiterpenes via targeted mutagenesis.
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Authors:
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Structural insights into a bacterial terpene cyclase fused with haloacid Dehalogenase-like phosphatase.,Fujiyama K, Takagi H, Vo NNQ, Morita N, Nogawa T, Takahashi S Chem Sci. 2025 Jul 28;16(34):15310-15319. doi: 10.1039/d5sc04719f. eCollection , 2025 Aug 27. PMID:40852458<ref>PMID:40852458</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9m7f" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aquimarina spongiae]]
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[[Category: Large Structures]]
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[[Category: Fujiyama K]]
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[[Category: Takahashi S]]
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[[Category: Vo NNQ]]

Current revision

Crystal structure of AsDMS D333N mutant in complex with farnesyl pyrophosphate

PDB ID 9m7f

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