9ncx
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==NitrOFF1 "ON" State== | |
| + | <StructureSection load='9ncx' size='340' side='right'caption='[[9ncx]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9ncx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9NCX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9NCX FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ncx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ncx OCA], [https://pdbe.org/9ncx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ncx RCSB], [https://www.ebi.ac.uk/pdbsum/9ncx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ncx ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The duality of nitrate is nowhere better exemplified than in human physiology-a detrimental pollutant but also a protective nutrient-particularly as connected to nitric oxide. Aside from limited insights into nitrate uptake and storage, foundational nitrate biology has lagged. Genetically encoded fluorescent biosensors can address this gap with real-time imaging, but such technologies for mammalian cell applications remain rare. Here, we designed and engineered a biosensor fusing the green fluorescent protein EGFP and the nitrate recognition domain NreA from Staphylococcus carnosus. Seven rounds of directed evolution and 15 mutations resulted in NitrOFF. NitrOFF has a high degree of allosteric communication between the domains reflected in a turn-off intensiometric response (K(d) approximately 9 microM). This was further reinforced by X-ray crystal structures of apo and nitrate-bound NitrOFF, which revealed a large-scale conformational rearrangement changing the relative positioning of the domains by 68.4 degrees . This dramatic difference was triggered by the formation of a long helix at the engineered linker connecting the two domains, peeling the beta7 strand off the EGFP and thus extinguishing the fluorescence upon nitrate binding. Finally, we highlighted the utility of NitrOFF to monitor exogenous nitrate uptake and modulation in the human embryonic kidney (HEK) 293 cell line. | ||
| - | + | NitrOFF: An Engineered Fluorescent Biosensor to Illuminate Nitrate Transport in Living Cells.,Cook MA, Smailys JD, Ji K, Phelps SM, Tutol JN, Kim W, Ong WSY, Peng W, Maydew C, Zhang YJ, Dodani SC Angew Chem Int Ed Engl. 2025 Aug 26:e202508058. doi: 10.1002/anie.202508058. PMID:40856431<ref>PMID:40856431</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Smailys | + | <div class="pdbe-citations 9ncx" style="background-color:#fffaf0;"></div> |
| - | [[Category: Zhang | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Escherichia coli]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Smailys J]] | ||
| + | [[Category: Zhang Y]] | ||
Current revision
NitrOFF1 "ON" State
| |||||||||||
