6rxe

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Current revision (06:25, 1 October 2025) (edit) (undo)
 
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<StructureSection load='6rxe' size='340' side='right'caption='[[6rxe]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
<StructureSection load='6rxe' size='340' side='right'caption='[[6rxe]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6rxe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222_=_DSM_20088 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RXE FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RXE FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IHS:D-MYO-INOSITOL-HEXASULPHATE'>IHS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IHS:D-MYO-INOSITOL-HEXASULPHATE'>IHS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rxe OCA], [https://pdbe.org/6rxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rxe RCSB], [https://www.ebi.ac.uk/pdbsum/6rxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rxe ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rxe OCA], [https://pdbe.org/6rxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rxe RCSB], [https://www.ebi.ac.uk/pdbsum/6rxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rxe ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
 
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[https://www.uniprot.org/uniprot/B7GTV0_BIFLS B7GTV0_BIFLS]
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Highly engineered phytases, which sequentially hydrolyze the hexakisphosphate ester of inositol known as phytic acid, are routinely added to the feeds of monogastric animals to improve phosphate bioavailability. New phytases are sought as starting points to further optimize the rate and extent of dephosphorylation of phytate in the animal digestive tract. Multiple inositol polyphosphate phosphatases (MINPPs) are clade 2 histidine phosphatases (HP2P) able to carry out the stepwise hydrolysis of phytate. MINPPs are not restricted by a strong positional specificity making them attractive targets for development as feed enzymes. Here, we describe the characterization of a MINPP from the Gram-positive bacterium Bifidobacterium longum (BlMINPP). BlMINPP has a typical HP2P-fold but, unusually, possesses a large alpha-domain polypeptide insertion relative to other MINPPs. This insertion, termed the U-loop, spans the active site and contributes to substrate specificity pockets underpopulated in other HP2Ps. Mutagenesis of U-loop residues reveals its contribution to enzyme kinetics and thermostability. Moreover, four crystal structures of the protein along the catalytic cycle capture, for the first time in an HP2P, a large ligand-driven alpha-domain motion essential to allow substrate access to the active site. This motion recruits residues both downstream of a molecular hinge and on the U-loop to participate in specificity subsites, and mutagenesis identified a mobile lysine residue as a key determinant of positional specificity of the enzyme. Taken together, these data provide important new insights to the factors determining stability, substrate recognition, and the structural mechanism of hydrolysis in this industrially important group of enzymes.
 
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Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced-fit structural mechanism.,Acquistapace IM, Zi Etek MA, Li AWH, Salmon M, Kuhn I, Bedford MR, Brearley CA, Hemmings AM J Biol Chem. 2020 Dec 18;295(51):17724-17737. doi: 10.1074/jbc.RA120.015925. PMID:33454010<ref>PMID:33454010</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6rxe" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Acid phosphatase 3D structures|Acid phosphatase 3D structures]]
*[[Acid phosphatase 3D structures|Acid phosphatase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Acquistapace IM]]
[[Category: Acquistapace IM]]
[[Category: Brearley CA]]
[[Category: Brearley CA]]
[[Category: Hemmings AM]]
[[Category: Hemmings AM]]

Current revision

Crystal Structure of Bifidobacterium longum Multiple Inositol Polyphosphate Phosphatase Complex with Inositol Hexasulfate

PDB ID 6rxe

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