9ih0

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Current revision (07:22, 8 October 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9ih0 is ON HOLD until Paper Publication
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==Crystal structure of Vaspin with PolyP45==
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<StructureSection load='9ih0' size='340' side='right'caption='[[9ih0]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9ih0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9IH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9IH0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1I43:[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]+phosphono+hydrogen+phosphate'>A1I43</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ih0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ih0 OCA], [https://pdbe.org/9ih0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ih0 RCSB], [https://www.ebi.ac.uk/pdbsum/9ih0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ih0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SPA12_HUMAN SPA12_HUMAN] May modulate insulin action conceivably only in the presence of its yet undefined target proteases in white adipose tissues.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Vaspin is highly expressed not only in the skin but also in the liver and adipose tissue. It counteracts inflammation and oxidative stress in inflammatory skin diseases, obesity, and associated metabolic disorders, in part by inhibiting the kallikrein proteases KLK7 and KLK14. Vaspin binds the cell-surface low-density lipoprotein receptor-related protein 1 (LRP1) with nanomolar affinity, and is rapidly internalized into adipocytes and other cells. We found intracellular vaspin partially localized in the nucleus. Since vaspin binds heparin and inorganic polyphosphates, we investigated the DNA binding of vaspin. Using DNA-affinity chromatography and differential radial capillary action of ligand assays, we found high-affinity binding to random sequences of single- and double-stranded DNA for both vaspin and KLK7. Furthermore, KLK7 inhibition was accelerated fivefold in the presence of DNA molecules at least 40 bases in length. We previously identified the heparin-binding site at a basic patch on the central beta-sheet A of vaspin. In the current work, we determined the crystal structure of polyphosphate P45-bound vaspin, which confirmed previously identified residues mutated to generate a nonheparin-binding (NHB) vaspin variant. While NHB vaspin failed to bind heparin and polyP45, it still bound DNA with high affinity and accelerated protease inhibition. Mutation of closely spaced basic residues in helix A and helix G did not significantly alter DNA binding. In conclusion, we have identified vaspin as the second human DNA-binding serpin. While the exact mode of the nonspecific interaction remains unclear, it accelerates protease inhibition and likely contributes to the nuclear localization observed for internalized vaspin and may allow for intracellular effects.
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Authors: Useini, A., Strater, N., Heiker, J.T.
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Vaspin identified as a DNA-binding serpin with functional consequences for protease inhibition.,Mohlis K, Useini A, Betat H, Bonin S, Broghammer H, Nuwayhid R, Langer S, Morl M, Strater N, Heiker JT FEBS J. 2025 Sep 21. doi: 10.1111/febs.70270. PMID:40975878<ref>PMID:40975878</ref>
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Description: Crystal structure of Vaspin with PolyP45
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Strater, N]]
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<div class="pdbe-citations 9ih0" style="background-color:#fffaf0;"></div>
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[[Category: Heiker, J.T]]
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== References ==
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[[Category: Useini, A]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Heiker JT]]
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[[Category: Strater N]]
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[[Category: Useini A]]

Current revision

Crystal structure of Vaspin with PolyP45

PDB ID 9ih0

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