Jumonji domain-containing protein 3D structures
From Proteopedia
(Difference between revisions)
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**[[2gf7]], [[2qqr]], [[5d6w]], [[5d6x]], [[7d4a]] – hJmjd2a double TUDOR domain – human <br /> | **[[2gf7]], [[2qqr]], [[5d6w]], [[5d6x]], [[7d4a]] – hJmjd2a double TUDOR domain – human <br /> | ||
| + | **[[9gii]], [[9gp4]] – hJmjd2a double TUDOR domain (mutant)<br /> | ||
**[[2gp3]] – hJmjd2a catalytic domain + Fe<br /> | **[[2gp3]] – hJmjd2a catalytic domain + Fe<br /> | ||
**[[5fyc]], [[5tvs]] – hJmjd2a catalytic domain + Ni<br /> | **[[5fyc]], [[5tvs]] – hJmjd2a catalytic domain + Ni<br /> | ||
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**[[4qx8]], [[4qx7]], [[4qwn]] – mJmj1a residues 36-364 + Ni + oxoglutarate + H3 peptide <br /> | **[[4qx8]], [[4qx7]], [[4qwn]] – mJmj1a residues 36-364 + Ni + oxoglutarate + H3 peptide <br /> | ||
| - | * Lysine-specific demethylase 3B; KDM3B; | + | * Lysine-specific demethylase 3B; KDM3B; Jmjd1B |
**[[5r7x]] – hKDM3b jmjc domain 1380-1728 + Mn <br /> | **[[5r7x]] – hKDM3b jmjc domain 1380-1728 + Mn <br /> | ||
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**[[5raa]], [[5rab]], [[5rac]], [[5rad]], [[5rae]], [[5raf]], [[5rag]], [[5rah]], [[5rai]], [[5raj]], [[5rak]], [[5ral]], [[5ram]], [[5ran]], [[5rao]], [[5rap]], [[5raq]], [[5rar]], [[5ras]], [[5rau]], [[5rav]], [[5raw]], [[5rax]], [[5ray]], [[5raz]], [[5rb0]], [[5rb1]], [[5rb2]], [[5rb3]], [[5rb4]], [[5rb5]], [[5rb6]], [[5rb7]], [[6rbj]] – hKDM3b jmjc domain + Mn + inhibitor<br /> | **[[5raa]], [[5rab]], [[5rac]], [[5rad]], [[5rae]], [[5raf]], [[5rag]], [[5rah]], [[5rai]], [[5raj]], [[5rak]], [[5ral]], [[5ram]], [[5ran]], [[5rao]], [[5rap]], [[5raq]], [[5rar]], [[5ras]], [[5rau]], [[5rav]], [[5raw]], [[5rax]], [[5ray]], [[5raz]], [[5rb0]], [[5rb1]], [[5rb2]], [[5rb3]], [[5rb4]], [[5rb5]], [[5rb6]], [[5rb7]], [[6rbj]] – hKDM3b jmjc domain + Mn + inhibitor<br /> | ||
| - | * | + | * Jmjd1C |
**[[5fzo]] – hJmj1c catalytic domain 2157-2500 + Mn <br /> | **[[5fzo]] – hJmj1c catalytic domain 2157-2500 + Mn <br /> | ||
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**[[6bva]] – hJmj1b + S-phase kinase-associated protein + polyubiquitin <br /> | **[[6bva]] – hJmj1b + S-phase kinase-associated protein + polyubiquitin <br /> | ||
**[[5jh5]] – hJmj1b + S-phase kinase-associated protein + polycomb protein + BCOR-like protein <br /> | **[[5jh5]] – hJmj1b + S-phase kinase-associated protein + polycomb protein + BCOR-like protein <br /> | ||
| + | |||
| + | *Jmjd2a (Lysine-specific demethylase 4A) | ||
| + | |||
| + | **[[9gle]], [[9gp1]] – hJmjd2a catalytic domain (mutant) + Ni + Zn<br /> | ||
*Jmjd2b (Lysine-specific demethylase 4B) | *Jmjd2b (Lysine-specific demethylase 4B) | ||
**[[4lxl]] – hJmjd2b catalytic domain + Ni + histone H3 peptide with trimethyllysine <br /> | **[[4lxl]] – hJmjd2b catalytic domain + Ni + histone H3 peptide with trimethyllysine <br /> | ||
| + | **[[7jm5]] – hJmjd2b catalytic domain + Ni + Zn + inhibitor<br /> | ||
**[[4uc4]] – hJmjd2b tudor domain <br /> | **[[4uc4]] – hJmjd2b tudor domain <br /> | ||
| + | **[[9h44]] – hJmjd2b tudor domain (mutant) <br /> | ||
*Jmjd2c (Lysine-specific demethylase 4C) | *Jmjd2c (Lysine-specific demethylase 4C) | ||
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**[[5kr7]] – hJmjd2c catalytic domain + Fe + Zn + inhibitor<br /> | **[[5kr7]] – hJmjd2c catalytic domain + Fe + Zn + inhibitor<br /> | ||
| - | *Jmjd2d (Lysine-specific demethylase 4D) | + | *Jmjd2d (Lysine-specific demethylase 4D, KDM4D) |
**[[3dxu]] – hJmjd2d catalytic domain + Fe + oxalylglycine <br /> | **[[3dxu]] – hJmjd2d catalytic domain + Fe + oxalylglycine <br /> | ||
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**[[4d6q]], [[5f5a]], [[5f5c]], [[5f5i]] – hJmjd2d catalytic domain + Ni + inhibitor<br /> | **[[4d6q]], [[5f5a]], [[5f5c]], [[5f5i]] – hJmjd2d catalytic domain + Ni + inhibitor<br /> | ||
**[[6ete]], [[6etg]], [[6ets]], [[6ett]], [[6etu]], [[6etv]], [[6etw]], [[6f5q]], [[6f5r]], [[6f5s]], [[6f5t]], [[6h0w]], [[6h0x]], [[6h0y]], [[6h0z]], [[6h10]], [[6h11]] – hJmjd2d catalytic domain + Ni + Zn + inhibitor<br /> | **[[6ete]], [[6etg]], [[6ets]], [[6ett]], [[6etu]], [[6etv]], [[6etw]], [[6f5q]], [[6f5r]], [[6f5s]], [[6f5t]], [[6h0w]], [[6h0x]], [[6h0y]], [[6h0z]], [[6h10]], [[6h11]] – hJmjd2d catalytic domain + Ni + Zn + inhibitor<br /> | ||
| - | **[[5fp4]], [[5fp8]], [[5fp9]], [[5fpa]], [[5fpb]], [[5fp7]] – hJmjd2d catalytic domain + Fe + inhibitor<br /> | + | **[[5fp4]], [[5fp8]], [[5fp9]], [[5fpa]], [[5fpb]], [[5fp7]], [[7dyg]], [[7dyq]] – hJmjd2d catalytic domain + Fe + inhibitor<br /> |
**[[4d6r]], [[4d6s]] – hJmjd2d catalytic domain + Ni + inhibitor + oxalylglycine <br /> | **[[4d6r]], [[4d6s]] – hJmjd2d catalytic domain + Ni + inhibitor + oxalylglycine <br /> | ||
**[[4hon]] – hJmjd2d catalytic domain + Ni + histone H3 peptide with trimethyllysine + α-ketoglutarate <br /> | **[[4hon]] – hJmjd2d catalytic domain + Ni + histone H3 peptide with trimethyllysine + α-ketoglutarate <br /> | ||
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**[[2xue]] – hJmjd3 catalytic domain + Fe + α-ketoglutarate <br /> | **[[2xue]] – hJmjd3 catalytic domain + Fe + α-ketoglutarate <br /> | ||
**[[6f6d]], [[5oy3]] – hJmjd3 catalytic domain + Fe + Zn + α-ketoglutarate + histone peptide<br /> | **[[6f6d]], [[5oy3]] – hJmjd3 catalytic domain + Fe + Zn + α-ketoglutarate + histone peptide<br /> | ||
| + | **[[9nqu]] – hJmjd3 catalytic domain + Fe + Zn in nucleosome – Cryo EM<br /> | ||
**[[4ask]] – hJmjd3 catalytic and Zinc finger domains + Co + inhibitor <br /> | **[[4ask]] – hJmjd3 catalytic and Zinc finger domains + Co + inhibitor <br /> | ||
**[[4eyu]], [[4ez4]] – mJmjd3 C terminal + Ni + oxalylglycine - mouse <br /> | **[[4eyu]], [[4ez4]] – mJmjd3 C terminal + Ni + oxalylglycine - mouse <br /> | ||
Current revision
3D structures of jumonji domain-containing protein
Updated on 09-October-2025
