9dth

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Current revision (07:04, 15 October 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9dth is ON HOLD until Paper Publication
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==Tyr-His linked F33Y CuBMb==
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<StructureSection load='9dth' size='340' side='right'caption='[[9dth]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9dth]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9DTH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9DTH FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9dth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9dth OCA], [https://pdbe.org/9dth PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9dth RCSB], [https://www.ebi.ac.uk/pdbsum/9dth PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9dth ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cross-linked protein residues exist as enzyme cofactors to enable or enhance catalytic activities. Despite their importance in nature, the chemical identity of the cross-links is limited to certain amino acid combinations, whose function and the formation mechanism remain insufficiently understood due to the difficulty in isolating native enzymes without the cross-links. Herein, we report the formation and characterization of both His-Tyr and His-His cross-links under oxidative enzymatic turnover conditions in L29H/F33Y/F43H Mb, a structural and functional model of heme-copper oxidase (HCO). The connectivity of the cross-link was characterized as N(epsilon2)(His29)-C(delta2)(His43) by mass spectrometry (LC-MS/MS) and nuclear magnetic resonance (NMR). Interestingly, formation of the cross-link significantly enhances the oxygen reduction activity of the enzyme at neutral or basic pH with higher product specificity. X-ray crystallography has identified a novel Tyr-His cross-link through a Tyr-O-His linkage. Our mechanistic studies indicate the involvement of high-valent heme-iron and the neighboring tyrosine in an oxidative self-processing pathway to generate the cross-link. This work serves as a new example while providing insights into the enzyme cross-link formation, allowing the design of artificial biocatalysts containing these novel cross-links with higher activity and pH adaptability.
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Authors: Lu, Y., Liu, Y.
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A Post-translational Histidine-Histidine Cross-Link Enhances Enzymatic Oxygen Reduction Activity with Greater pH Adaptability.,Liu Y, Vilbert AC, Ghosh B, Young RP, Merkley ED, Mukherjee A, Phan L, Van Stappen C, Baghi-Damodaran A, Miner KD, Adkins J, Cort J, Lu Y J Am Chem Soc. 2025 Oct 6. doi: 10.1021/jacs.5c12710. PMID:41047894<ref>PMID:41047894</ref>
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Description: Tyr-His linked F33Y CuBMb
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Liu, Y]]
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<div class="pdbe-citations 9dth" style="background-color:#fffaf0;"></div>
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[[Category: Lu, Y]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Physeter catodon]]
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[[Category: Liu Y]]
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[[Category: Lu Y]]

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Tyr-His linked F33Y CuBMb

PDB ID 9dth

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