9u6y

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Current revision (07:29, 29 October 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9u6y is ON HOLD until Paper Publication
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==Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3N==
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<StructureSection load='9u6y' size='340' side='right'caption='[[9u6y]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9u6y]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9U6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9U6Y FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9u6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9u6y OCA], [https://pdbe.org/9u6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9u6y RCSB], [https://www.ebi.ac.uk/pdbsum/9u6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9u6y ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VATA_THET8 VATA_THET8] Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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ATP synthases are rotary molecular machines that use the proton motive force to rotate the central rotor complex relative to the surrounding stator apparatus, thereby coupling the ATP synthesis. We reconstituted the V/A-ATPase into liposomes and performed structural analysis using cryo-EM under conditions where the proton motive force was applied in the presence of ADP and Pi. ATP molecules were bound at two of the three catalytic sites of V/A-ATPase, confirming that the structure represents a state adopted during ATP synthesis. In this structure, the catalytic site closes upon binding of ADP and Pi through an induced fit mechanism. Multiple structures were obtained where the membrane-embedded rotor ring was in a different position relative to the stator. By comparing these structures, we found that torsion occurs in both the central rotor and the peripheral stator during 31 degrees rotation of rotor ring. These structural snapshots of V/A-ATPase provide crucial insights into the mechanism of rotary catalysis of ATP synthesis.
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Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
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Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.,Nakano A, Kishikawa JI, Yui N, Sugawara K, Kan Y, Gerle C, Shigematsu H, Mitsuoka K, Yokoyama K Sci Adv. 2025 Oct 17;11(42):eadx8771. doi: 10.1126/sciadv.adx8771. Epub 2025 Oct , 17. PMID:41105777<ref>PMID:41105777</ref>
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Description: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3N
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nakano, A]]
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<div class="pdbe-citations 9u6y" style="background-color:#fffaf0;"></div>
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[[Category: Shigematsu, H]]
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== References ==
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[[Category: Nishida, Y]]
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<references/>
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[[Category: Yokoyama, K]]
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__TOC__
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[[Category: Mitsuoka, M]]
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</StructureSection>
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[[Category: Gerle, C]]
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[[Category: Large Structures]]
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[[Category: Kishikawa, J]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: Gerle C]]
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[[Category: Kishikawa J]]
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[[Category: Mitsuoka M]]
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[[Category: Nakano A]]
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[[Category: Nishida Y]]
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[[Category: Shigematsu H]]
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[[Category: Yokoyama K]]

Current revision

Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3N

PDB ID 9u6y

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