9qm6
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of highly stable methionine gamma-lyase from Thermobrachium celere in complex with PLP and norleucine== | |
| + | <StructureSection load='9qm6' size='340' side='right'caption='[[9qm6]], [[Resolution|resolution]] 2.61Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9qm6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridiaceae Clostridiaceae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9QM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9QM6 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.607Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9qm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9qm6 OCA], [https://pdbe.org/9qm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9qm6 RCSB], [https://www.ebi.ac.uk/pdbsum/9qm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9qm6 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/R7RTI8_9CLOT R7RTI8_9CLOT] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | L-Methionine deprivation for cancer treatment requires pyridoxal 5'-phosphate (PLP)-dependent L-methionine gamma-lyases (MGL) with sustained activity in plasma. We investigated the MGL from the alkaliphilic thermophile Thermobrachium celere (TcMGL), which was compared to that from Pseudomonas putida (PpMGL) as a reference. Catalysis was limited to L-methionine, L-homocysteine, and L-cysteine, with highest catalytic efficiency towards L-methionine. Binding of apo-TcMGL to PLP results from an endothermic entropy-driven process, contrasting with apo-PpMGL that binds to cofactor following an exothermic enthalpy-driven reaction, as demonstrated with isothermal titration calorimetry. The tetrameric crystal structure of TcMGL revealed a mobile domain adopting open and closed conformations, regulating access of substrate and PLP to the active site. TcMGL exhibited great stability in human plasma in vitro. Half-life of the active enzyme increased from 9.2 h to 66.7 h with increasing PLP concentration, in much greater magnitude than that of PpMGL. Two-way ANOVA demonstrated a highly significant effect on half-lives of enzyme type and PLP concentration. The enzyme eliminated L-methionine from human plasma and exerted potent cytotoxicity against human carcinoma cells in vitro. TcMGL favourable characteristics make it a suitable candidate for treatment of cancer. | ||
| - | + | The methioninase from the alkalithermophile Thermobrachium celere possesses suitable properties for treatment of cancer.,Ferchaud N, Kopecny D, Perina M, Boyer A, Hentati S, Pontoizeau C, Desterke C, Krystof V, Machover D, Briozzo P Int J Biol Macromol. 2025 Nov;330(Pt 2):147876. doi: , 10.1016/j.ijbiomac.2025.147876. Epub 2025 Sep 24. PMID:41005402<ref>PMID:41005402</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 9qm6" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Clostridiaceae]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Briozzo P]] | ||
| + | [[Category: Ferchaud N]] | ||
| + | [[Category: Kopecny D]] | ||
Current revision
Crystal structure of highly stable methionine gamma-lyase from Thermobrachium celere in complex with PLP and norleucine
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