9i0f

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Current revision (19:17, 4 December 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9i0f is ON HOLD
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==Revisited AvNifEN crystal structure==
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<StructureSection load='9i0f' size='340' side='right'caption='[[9i0f]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9i0f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii_DJ Azotobacter vinelandii DJ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9I0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9I0F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9i0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9i0f OCA], [https://pdbe.org/9i0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9i0f RCSB], [https://www.ebi.ac.uk/pdbsum/9i0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9i0f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/C1DH03_AZOVD C1DH03_AZOVD]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nitrogenase catalyzes atmospheric nitrogen fixation, a critical biological process that depends on an intricate organometallic cofactor assembled by a dedicated multiprotein system. Here we uncover the structural basis for the function of NifEN, the scaffold protein that mediates the final stages of cofactor biosynthesis before its incorporation into nitrogenase. High-resolution structural analyses reveal that the cofactor precursor initially binds at a surface docking site before being transferred into a specialized cavity for further maturation. This process involves dynamic structural rearrangements, including coordinated domain motions and partial unfolding, enabling the scaffold to alternate between open and closed states. Additionally, a rear channel extends to the precursor-binding cavity, likely facilitating the entry of the modifying components molybdenum and homocitrate. These findings illuminate the dynamic mechanisms underlying FeMo-cofactor assembly and underscore the functional divergence between NifEN, the biosynthetic scaffold, and NifDK, the catalytic component of nitrogenase.
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Authors: Paya Tormo, L., Nguyen, T.Q., Fyfe, C., Basbous, H., Dobrzynska, K., Echavarri-Erasun, C., Martin, L., Caserta, G., Legrand, P., Thorn, A., Amara, P., Schoehn, G., Cherrier, M.V., Rubio, L.M., Nicolet, Y.
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Dynamics driving the precursor in NifEN scaffold during nitrogenase FeMo-cofactor assembly.,Paya Tormo L, Nguyen TQ, Fyfe C, Basbous H, Dobrzynska K, Echavarri-Erasun C, Martin L, Caserta G, Legrand P, Thorn A, Amara P, Schoehn G, Cherrier MV, Rubio LM, Nicolet Y Nat Chem Biol. 2025 Nov 14. doi: 10.1038/s41589-025-02070-4. PMID:41238839<ref>PMID:41238839</ref>
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Description: Revisited AvNifEN crystal structure
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nguyen, T.Q]]
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<div class="pdbe-citations 9i0f" style="background-color:#fffaf0;"></div>
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[[Category: Amara, P]]
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== References ==
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[[Category: Fyfe, C]]
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<references/>
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[[Category: Cherrier, M.V]]
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__TOC__
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[[Category: Caserta, G]]
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</StructureSection>
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[[Category: Nicolet, Y]]
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[[Category: Azotobacter vinelandii DJ]]
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[[Category: Rubio, L.M]]
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[[Category: Large Structures]]
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[[Category: Paya Tormo, L]]
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[[Category: Amara P]]
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[[Category: Dobrzynska, K]]
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[[Category: Basbous H]]
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[[Category: Thorn, A]]
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[[Category: Caserta G]]
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[[Category: Echavarri-Erasun, C]]
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[[Category: Cherrier MV]]
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[[Category: Schoehn, G]]
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[[Category: Dobrzynska K]]
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[[Category: Martin, L]]
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[[Category: Echavarri-Erasun C]]
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[[Category: Basbous, H]]
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[[Category: Fyfe C]]
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[[Category: Legrand, P]]
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[[Category: Legrand P]]
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[[Category: Martin L]]
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[[Category: Nguyen TQ]]
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[[Category: Nicolet Y]]
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[[Category: Paya Tormo L]]
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[[Category: Rubio LM]]
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[[Category: Schoehn G]]
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[[Category: Thorn A]]

Current revision

Revisited AvNifEN crystal structure

PDB ID 9i0f

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