9ic7

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Current revision (19:17, 4 December 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9ic7 is ON HOLD until Paper Publication
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==Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)==
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<StructureSection load='9ic7' size='340' side='right'caption='[[9ic7]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9ic7]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9IC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9IC7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ic7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ic7 OCA], [https://pdbe.org/9ic7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ic7 RCSB], [https://www.ebi.ac.uk/pdbsum/9ic7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ic7 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/SYUA_HUMAN SYUA_HUMAN] Note=Genetic alterations of SNCA resulting in aberrant polymerization into fibrils, are associated with several neurodegenerative diseases (synucleinopathies). SNCA fibrillar aggregates represent the major non A-beta component of Alzheimer disease amyloid plaque, and a major component of Lewy body inclusions. They are also found within Lewy body (LB)-like intraneuronal inclusions, glial inclusions and axonal spheroids in neurodegeneration with brain iron accumulation type 1. Defects in SNCA are the cause of Parkinson disease type 1 (PARK1) [MIM:[https://omim.org/entry/168601 168601]. A complex neurodegenerative disorder characterized by bradykinesia, resting tremor, muscular rigidity and postural instability. Additional features are characteristic postural abnormalities, dysautonomia, dystonic cramps, and dementia. The pathology of Parkinson disease involves the loss of dopaminergic neurons in the substantia nigra and the presence of Lewy bodies (intraneuronal accumulations of aggregated proteins), in surviving neurons in various areas of the brain. The disease is progressive and usually manifests after the age of 50 years, although early-onset cases (before 50 years) are known. The majority of the cases are sporadic suggesting a multifactorial etiology based on environmental and genetic factors. However, some patients present with a positive family history for the disease. Familial forms of the disease usually begin at earlier ages and are associated with atypical clinical features.<ref>PMID:9197268</ref> <ref>PMID:9462735</ref> <ref>PMID:14755719</ref> Defects in SNCA are the cause of Parkinson disease type 4 (PARK4) [MIM:[https://omim.org/entry/605543 605543]. A complex neurodegenerative disorder with manifestations ranging from typical Parkinson disease to dementia with Lewy bodies. Clinical features include parkinsonian symptoms (tremor, rigidity, postural instability and bradykinesia), dementia, diffuse Lewy body pathology, autonomic dysfunction, hallucinations and paranoia. Defects in SNCA are the cause of dementia Lewy body (DLB) [MIM:[https://omim.org/entry/127750 127750]. A neurodegenerative disorder clinically characterized by mental impairment leading to dementia, parkinsonism, often with fluctuating cognitive function, visual hallucinations, falls, syncopal episodes, and sensitivity to neuroleptic medication. Brainstem or cortical intraneuronal accumulations of aggregated proteins (Lewy bodies) are the only essential pathologic features. Patients may also have hippocampal and neocortical senile plaques, sometimes in sufficient number to fulfill the diagnostic criteria for Alzheimer disease.
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== Function ==
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[https://www.uniprot.org/uniprot/SYUA_HUMAN SYUA_HUMAN] May be involved in the regulation of dopamine release and transport. Induces fibrillization of microtubule-associated protein tau. Reduces neuronal responsiveness to various apoptotic stimuli, leading to a decreased caspase-3 activation.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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alpha-Synuclein (aSyn) is an intrinsically disordered protein involved in neurotransmission and synaptic plasticity. The pathological aggregation of this protein is a hallmark of synucleinopathies such as Parkinson's disease (PD) or Multiple System Atrophy (MSA). Misfolded aSyn, which primarily originates in the cell cytosol, transmits between neurons, promoting a prion-like propagation. However, extracellular environments such as interstitial and cerebrospinal fluids (ISF &amp; CSF) play a major role in its clearance and pathological transformation. The molecular components of CSF, including proteins, glycosaminoglycans, and metal ions, may influence the aggregate morphology, structure, and cytotoxicity to cells. To better understand how extracellular composition affects aggregates and their formation, artificial cerebrospinal fluid (aCSF) is employed to mimic potential aggregation processes occurring in CSF. Distinct aSyn fibrils are observed that exhibited low stability outside aCSF, and the removal of key CSF components led to its structural alterations. Cryo-electron microscopy revealed that these fibrils possess an electron density pocket coordinated with polar basic AAs (K43, K45, H50) that is also observed in aggregates obtained from PD and MSA patients. The findings illustrate the importance of physiologically relevant conditions in studying aSyn aggregation and may explain why disease-related fibril structure replication in vitro has not yet been successful.
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Authors: Snieckute, R., Sulskis, D., Jocyte, A., Venclovaite, U., Tamulyte, R., Ziaunys, M., Smirnovas, V., Sakalauskas, A.
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Formation of Condition-Dependent Alpha-Synuclein Fibril Strain in Artificial Cerebrospinal Fluid.,Snieckute R, Sulskis D, Jocyte A, Venclovaite U, Tamulyte R, Ziaunys M, Smirnovas V, Sakalauskas A Adv Sci (Weinh). 2025 Nov 20:e05228. doi: 10.1002/advs.202505228. PMID:41262012<ref>PMID:41262012</ref>
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Description: Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ziaunys, M]]
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<div class="pdbe-citations 9ic7" style="background-color:#fffaf0;"></div>
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[[Category: Venclovaite, U]]
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== References ==
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[[Category: Tamulyte, R]]
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<references/>
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[[Category: Smirnovas, V]]
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__TOC__
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[[Category: Sulskis, D]]
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</StructureSection>
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[[Category: Jocyte, A]]
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[[Category: Homo sapiens]]
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[[Category: Sakalauskas, A]]
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[[Category: Large Structures]]
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[[Category: Snieckute, R]]
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[[Category: Jocyte A]]
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[[Category: Sakalauskas A]]
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[[Category: Smirnovas V]]
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[[Category: Snieckute R]]
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[[Category: Sulskis D]]
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[[Category: Tamulyte R]]
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[[Category: Venclovaite U]]
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[[Category: Ziaunys M]]

Current revision

Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)

PDB ID 9ic7

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