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9p4d

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Current revision (09:21, 14 January 2026) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9p4d is ON HOLD until Paper Publication
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==Crystal Structure of Engineered glutamine binding protein and a Gd-DOTA ligand - Gln bound==
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<StructureSection load='9p4d' size='340' side='right'caption='[[9p4d]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9p4d]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9P4D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9P4D FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.57&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1C21:4-oxidanylidene-4-[2-[2-[4,7,10-tris(2-hydroxy-2-oxoethyl)-1,4,7,10-tetrazacyclododec-1-yl]ethanoylamino]ethylamino]butanoic+acid'>A1C21</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GD3:GADOLINIUM+ION'>GD3</scene>, <scene name='pdbligand=GLN:GLUTAMINE'>GLN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9p4d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9p4d OCA], [https://pdbe.org/9p4d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9p4d RCSB], [https://www.ebi.ac.uk/pdbsum/9p4d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9p4d ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/C3THM2_ECOLX C3THM2_ECOLX]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Magnetic resonance imaging (MRI) is widely used to visualize disease, and image quality can be improved through use of MRI contrast agents. Currently available agents produce a signal based solely on spatial distribution, but modern metabolic profiling has uncovered a variety of biomarkers for disease. For example, tumors greatly increase their uptake and catabolism of glutamine (Gln), leading to modified local concentration. Our laboratory previously developed a switchable artificial metalloprotein (swArM) platform in which Gln-binding causes a protein conformational change that modifies the physicochemical environment of an installed metallocofactor. Installing MRI-active metallocofactors within swArMs, we present a proof-of-concept approch toward the development of an analyte-responsive MRI contrast agent. To develop these swArMs, we tested several MRI-active metals (Gd(3+), Dy(3+)), chelating ligands (DOTA, DTPA, NOTA), and attachment sites, as well as the impacts of peripheral mutations on the Gln-responsive signal. In each case, metal content was analytically defined, and Gln-binding affinity was determined by isothermal titration calorimetry. Circular dichroism was used to verify that our swArMs could still undergo the conformational change. X-ray diffraction structures of the apo- and holo-swArMs further revealed that the metallocofactor is significantly solvent-exposed in both conformations, but exhibits additional interactions with the protein in the holo-state coinciding with the observed increase in T (2) relaxivity of approximately 60% upon Gln-binding.
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Authors:
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Development of a glutamine-responsive MRI contrast agent.,Wilson CA, Bruchs AT, Fatima S, Boggs DG, Bridwell-Rabb J, Olshansky L Chem Sci. 2025 Nov 20. doi: 10.1039/d5sc05987a. PMID:41395538<ref>PMID:41395538</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9p4d" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: Boggs DG]]
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[[Category: Bridwell-Rabb J]]
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[[Category: Bruchs AT]]
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[[Category: Fatima S]]
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[[Category: Olshansky L]]
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[[Category: Wilson CA]]

Current revision

Crystal Structure of Engineered glutamine binding protein and a Gd-DOTA ligand - Gln bound

PDB ID 9p4d

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