1xby

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[[Image:1xby.gif|left|200px]]
[[Image:1xby.gif|left|200px]]
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{{Structure
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|PDB= 1xby |SIZE=350|CAPTION= <scene name='initialview01'>1xby</scene>, resolution 1.58&Aring;
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The line below this paragraph, containing "STRUCTURE_1xby", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=5RP:RIBULOSE-5-PHOSPHATE'>5RP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE= UlaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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|DOMAIN=
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{{STRUCTURE_1xby| PDB=1xby | SCENE= }}
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|RELATEDENTRY=[[1xbv|1XBV]], [[1xbx|1XBX]], [[1xbz|1XBZ]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xby OCA], [http://www.ebi.ac.uk/pdbsum/1xby PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xby RCSB]</span>
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}}
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'''Structure of 3-keto-L-gulonate 6-phosphate decarboxylase E112D/T169A mutant with bound D-ribulose 5-phosphate'''
'''Structure of 3-keto-L-gulonate 6-phosphate decarboxylase E112D/T169A mutant with bound D-ribulose 5-phosphate'''
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==About this Structure==
==About this Structure==
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1XBY is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XBY OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XBY OCA].
==Reference==
==Reference==
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: structural basis for catalytic promiscuity in wild-type and designed mutants of 3-keto-L-gulonate 6-phosphate decarboxylase., Wise EL, Yew WS, Akana J, Gerlt JA, Rayment I, Biochemistry. 2005 Feb 15;44(6):1816-23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15697207 15697207]
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: structural basis for catalytic promiscuity in wild-type and designed mutants of 3-keto-L-gulonate 6-phosphate decarboxylase., Wise EL, Yew WS, Akana J, Gerlt JA, Rayment I, Biochemistry. 2005 Feb 15;44(6):1816-23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15697207 15697207]
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[[Category: Escherichia coli]]
 
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[[Category: Protein complex]]
 
[[Category: Akana, J.]]
[[Category: Akana, J.]]
[[Category: Gerlt, J A.]]
[[Category: Gerlt, J A.]]
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[[Category: Wise, E L.]]
[[Category: Wise, E L.]]
[[Category: Yew, W S.]]
[[Category: Yew, W S.]]
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[[Category: tim barrel]]
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[[Category: Tim barrel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 14:50:01 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:47:28 2008''
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Revision as of 11:50, 3 May 2008

Template:STRUCTURE 1xby

Structure of 3-keto-L-gulonate 6-phosphate decarboxylase E112D/T169A mutant with bound D-ribulose 5-phosphate


Overview

3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-hex-3-ulose 6-phosphate synthase (HPS), members of the orotidine 5'-monophosphate decarboxylase (OMPDC) suprafamily, catalyze reactions that involve the formation of Mg(2+)-ion stabilized 1,2-enediolate intermediates. The active sites of KGPDC and HPS share several conserved residues, including the presumed ligands for the Mg(2+) and a catalytic histidine residue that has been implicated in protonation of the intermediate in the KGPDC-catalyzed reaction. As reported in the previous manuscript, both enzymes are naturally promiscuous, with KGPDC from Escherichia coli catalyzing a low level of the HPS reaction and the HPS from Methylomonas aminofaciens catalyzing a significant level of the KGPDC reaction. Interestingly, the promiscuous HPS reaction catalyzed by KGPDC can be significantly enhanced by replacing no more than four active site residues from KGPDC reaction with residues from HPS. In this manuscript, we report structural studies of wild-type and mutant KDGPC's that provide a structural explanation for both the natural promiscuity for the HPS reaction and the enhanced HPS activity and diminished KGPDC activity catalyzed by active site mutants.

About this Structure

Full crystallographic information is available from OCA.

Reference

Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: structural basis for catalytic promiscuity in wild-type and designed mutants of 3-keto-L-gulonate 6-phosphate decarboxylase., Wise EL, Yew WS, Akana J, Gerlt JA, Rayment I, Biochemistry. 2005 Feb 15;44(6):1816-23. PMID:15697207 Page seeded by OCA on Sat May 3 14:50:01 2008

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