1yit

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[[Image:1yit.gif|left|200px]]
[[Image:1yit.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1yit |SIZE=350|CAPTION= <scene name='initialview01'>1yit</scene>, resolution 2.80&Aring;
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The line below this paragraph, containing "STRUCTURE_1yit", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=1MA:6-HYDRO-1-METHYLADENOSINE-5&#39;-MONOPHOSPHATE'>1MA</scene>, <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OMG:O2&#39;-METHYLGUANOSINE-5&#39;-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=OMU:O2&#39;-METHYLURIDINE+5&#39;-MONOPHOSPHATE'>OMU</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5&#39;-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5&#39;-MONOPHOSHATE'>UR3</scene>, <scene name='pdbligand=VIR:VIRGINIAMYCIN+M1'>VIR</scene>, <scene name='pdbligand=VRS:VIRGINIAMYCIN+S1'>VRS</scene>
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|GENE=
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|DOMAIN=
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{{STRUCTURE_1yit| PDB=1yit | SCENE= }}
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|RELATEDENTRY=[[1yhq|1YHQ]], [[1yi2|1YI2]], [[1yij|1YIJ]], [[1yj9|1YJ9]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yit OCA], [http://www.ebi.ac.uk/pdbsum/1yit PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yit RCSB]</span>
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}}
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'''Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui'''
'''Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui'''
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[[Category: Tu, D.]]
[[Category: Tu, D.]]
[[Category: 50s subunit]]
[[Category: 50s subunit]]
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[[Category: antibiotic complex]]
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[[Category: Antibiotic complex]]
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[[Category: virginiamycin m]]
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[[Category: Virginiamycin m]]
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[[Category: virginiamycin s]]
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[[Category: Virginiamycin s]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:22:18 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:08:48 2008''
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Revision as of 13:22, 3 May 2008

Image:1yit.gif

Template:STRUCTURE 1yit

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui


Overview

Crystal structures of H. marismortui large ribosomal subunits containing the mutation G2099A (A2058 in E. coli) with erythromycin, azithromycin, clindamycin, virginiamycin S, and telithromycin bound explain why eubacterial ribosomes containing the mutation A2058G are resistant to them. Azithromycin binds almost identically to both G2099A and wild-type subunits, but the erythromycin affinity increases by more than 10(4)-fold, implying that desolvation of the N2 of G2099 accounts for the low wild-type affinity for macrolides. All macrolides bind similarly to the H. marismortui subunit, but their binding differs significantly from what has been reported in the D. radioidurans subunit. The synergy in the binding of streptogramins A and B appears to result from a reorientation of the base of A2103 (A2062, E. coli) that stacks between them. The structure of large subunit containing a three residue deletion mutant of L22 shows a change in the L22 structure and exit tunnel shape that illuminates its macrolide resistance phenotype.

About this Structure

1YIT is a Protein complex structure of sequences from Haloarcula marismortui. Full crystallographic information is available from OCA.

Reference

Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance., Tu D, Blaha G, Moore PB, Steitz TA, Cell. 2005 Apr 22;121(2):257-70. PMID:15851032 Page seeded by OCA on Sat May 3 16:22:18 2008

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