1ynd

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[[Image:1ynd.gif|left|200px]]
[[Image:1ynd.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1ynd |SIZE=350|CAPTION= <scene name='initialview01'>1ynd</scene>, resolution 1.60&Aring;
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The line below this paragraph, containing "STRUCTURE_1ynd", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=SFA:SANGLIFEHRIN+A'>SFA</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= PPIA, CYPA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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-->
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|DOMAIN=
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{{STRUCTURE_1ynd| PDB=1ynd | SCENE= }}
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|RELATEDENTRY=[[1nmk|1NMK]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ynd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ynd OCA], [http://www.ebi.ac.uk/pdbsum/1ynd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ynd RCSB]</span>
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}}
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'''Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6A resolution'''
'''Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6A resolution'''
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[[Category: Wagner, J.]]
[[Category: Wagner, J.]]
[[Category: Zenke, G.]]
[[Category: Zenke, G.]]
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[[Category: beta sandwich]]
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[[Category: Beta sandwich]]
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[[Category: cyclophilin-ligand complex]]
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[[Category: Cyclophilin-ligand complex]]
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[[Category: cyclosporin]]
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[[Category: Cyclosporin]]
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[[Category: isomerase]]
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[[Category: Isomerase]]
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[[Category: rotamase]]
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[[Category: Rotamase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:32:36 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:14:16 2008''
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Revision as of 13:32, 3 May 2008

Template:STRUCTURE 1ynd

Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6A resolution


Overview

Sanglifehrin A (SFA) is a novel immunosuppressant isolated from Streptomyces sp. that binds strongly to the human immunophilin cyclophilin A (CypA). SFA exerts its immunosuppressive activity through a mode of action different from that of all other known immunophilin-binding substances, namely cyclosporine A (CsA), FK506, and rapamycin. We have determined the crystal structure of human CypA in complex with SFA at 1.6 A resolution. The high resolution of the structure revealed the absolute configuration at all 17 chiral centers of SFA as well as the details of the CypA/SFA interactions. In particular, it was shown that the 22-membered macrocycle of SFA is deeply embedded in the same binding site as CsA and forms six direct hydrogen bonds with CypA. The effector domain of SFA, on the other hand, has a chemical and three-dimensional structure very different from CsA, already strongly suggesting different immunosuppressive mechanisms. Furthermore, two CypA.SFA complexes form a dimer in the crystal as well as in solution as shown by light scattering and size exclusion chromatography experiments. This observation raises the possibility that the dimer of CypA.SFA complexes is the molecular species mediating the immunosuppressive effect.

About this Structure

1YND is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6 A resolution., Kallen J, Sedrani R, Zenke G, Wagner J, J Biol Chem. 2005 Jun 10;280(23):21965-71. Epub 2005 Mar 16. PMID:15772070 Page seeded by OCA on Sat May 3 16:32:36 2008

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