1z59

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[[Image:1z59.gif|left|200px]]
[[Image:1z59.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1z59 |SIZE=350|CAPTION= <scene name='initialview01'>1z59</scene>, resolution 2.10&Aring;
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The line below this paragraph, containing "STRUCTURE_1z59", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5&#39;-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= top6B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2286 Sulfolobus shibatae])
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-->
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|DOMAIN=
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{{STRUCTURE_1z59| PDB=1z59 | SCENE= }}
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|RELATEDENTRY=[[1mu5|1MU5]], [[1mx0|1MX0]], [[1z5a|1Z5A]], [[1z5b|1Z5B]], [[1z5c|1Z5C]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z59 OCA], [http://www.ebi.ac.uk/pdbsum/1z59 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z59 RCSB]</span>
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}}
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'''Topoisomerase VI-B, ADP-bound monomer form'''
'''Topoisomerase VI-B, ADP-bound monomer form'''
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==Reference==
==Reference==
Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI., Corbett KD, Berger JM, Structure. 2005 Jun;13(6):873-82. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15939019 15939019]
Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI., Corbett KD, Berger JM, Structure. 2005 Jun;13(6):873-82. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15939019 15939019]
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[[Category: DNA topoisomerase (ATP-hydrolyzing)]]
 
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Sulfolobus shibatae]]
[[Category: Sulfolobus shibatae]]
[[Category: Berger, J M.]]
[[Category: Berger, J M.]]
[[Category: Corbett, K D.]]
[[Category: Corbett, K D.]]
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[[Category: archaea]]
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[[Category: Archaea]]
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[[Category: atpase]]
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[[Category: Atpase]]
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[[Category: topoisomerase]]
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[[Category: Topoisomerase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 17:11:32 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:29:14 2008''
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Revision as of 14:11, 3 May 2008

Template:STRUCTURE 1z59

Topoisomerase VI-B, ADP-bound monomer form


Overview

GHL proteins are functionally diverse enzymes defined by the presence of a conserved ATPase domain that self-associates to trap substrate upon nucleotide binding. The structural states adopted by these enzymes during nucleotide hydrolysis and product release, and their consequences for enzyme catalysis, have remained unclear. Here, we have determined a complete structural map of the ATP turnover cycle for topoVI-B, the ATPase subunit of the archaeal GHL enzyme topoisomerase VI. With this ensemble of structures, we show that significant conformational changes in the subunit occur first upon ATP binding, and subsequently upon release of hydrolyzed P(i). Together, these data provide a structural framework for understanding the role of ATP hydrolysis in the type II topoisomerase reaction. Our results also suggest that the GHL ATPase module is a molecular switch in which ATP hydrolysis serves as a prerequisite but not a driving force for substrate-dependent structural transitions in the enzyme.

About this Structure

1Z59 is a Single protein structure of sequence from Sulfolobus shibatae. Full crystallographic information is available from OCA.

Reference

Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI., Corbett KD, Berger JM, Structure. 2005 Jun;13(6):873-82. PMID:15939019 Page seeded by OCA on Sat May 3 17:11:32 2008

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