2anl

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[[Image:2anl.gif|left|200px]]
[[Image:2anl.gif|left|200px]]
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{{Structure
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|PDB= 2anl |SIZE=350|CAPTION= <scene name='initialview01'>2anl</scene>, resolution 3.3&Aring;
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The line below this paragraph, containing "STRUCTURE_2anl", creates the "Structure Box" on the page.
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|LIGAND= <scene name='pdbligand=JE2:(R)-N-(2-METHYLBENZYL)-3-[(2S,3S)-2-HYDROXY-3-(3-HYDROXY-2-METHYLBENZOYL)AMINO-4-PHENYLBUTANOYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXAMIDE'>JE2</scene>
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{{STRUCTURE_2anl| PDB=2anl | SCENE= }}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2anl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2anl OCA], [http://www.ebi.ac.uk/pdbsum/2anl PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2anl RCSB]</span>
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'''X-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor'''
'''X-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor'''
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[[Category: Moose, R E.]]
[[Category: Moose, R E.]]
[[Category: Yowell, C A.]]
[[Category: Yowell, C A.]]
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[[Category: aspartic protease]]
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[[Category: Aspartic protease]]
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[[Category: plasmepsin 4]]
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[[Category: Plasmepsin 4]]
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[[Category: plasmodium parasite]]
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[[Category: Plasmodium parasite]]
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[[Category: x-ray structure]]
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[[Category: X-ray structure]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 19:15:26 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:54:59 2008''
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Revision as of 16:15, 3 May 2008

Image:2anl.gif

Template:STRUCTURE 2anl

X-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor


Overview

The malarial parasite continues to be one of the leading causes of death in many developing countries. With the development of resistance to the currently available treatments, the discovery of new therapeutics is imperative. Currently, the plasmepsin enzymes found in the food vacuole of the parasite are a chief target for drug development. Allophenylnorstatine-based compounds originally designed to inhibit HIV-1 protease have shown efficacy against all four plasmepsin enzymes found in the food vacuole of Plasmodium falciparum. In this study, the first crystal structure of P. malariae plasmepsin 4 (PmPM4) bound to the allophenylnorstatine-based compound KNI-764 is described at 3.3 Angstroms resolution. The PmPM4-inhibitor complex crystallized in the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 95.9, b = 112.6, c = 90.4 Angstroms, with two molecules in the asymmetric unit related by a non-crystallographic symmetry operator. The structure was refined to a final R factor of 24.7%. The complex showed the inhibitor in an unexpected binding orientation with allophenylnorstatine occupying the S1' pocket. The P2 group was found outside the S2 pocket, wedged between the flap and a juxtaposed loop. Inhibition analysis of PmPM4 also suggests the potential for allophenylnorstatine-based compounds to be effective against all species of malaria infecting humans and for the future development of a broad-based inhibitor.

About this Structure

2ANL is a Single protein structure of sequence from Plasmodium malariae. Full crystallographic information is available from OCA.

Reference

Structure of the aspartic protease plasmepsin 4 from the malarial parasite Plasmodium malariae bound to an allophenylnorstatine-based inhibitor., Clemente JC, Govindasamy L, Madabushi A, Fisher SZ, Moose RE, Yowell CA, Hidaka K, Kimura T, Hayashi Y, Kiso Y, Agbandje-McKenna M, Dame JB, Dunn BM, McKenna R, Acta Crystallogr D Biol Crystallogr. 2006 Mar;62(Pt 3):246-52. Epub 2006, Feb 22. PMID:16510971 Page seeded by OCA on Sat May 3 19:15:26 2008

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