This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bdz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2bdz.jpg|left|200px]]
[[Image:2bdz.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2bdz |SIZE=350|CAPTION= <scene name='initialview01'>2bdz</scene>, resolution 2.100&Aring;
+
The line below this paragraph, containing "STRUCTURE_2bdz", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_2bdz| PDB=2bdz | SCENE= }}
-
|RELATEDENTRY=[[1yal|1YAL]], [[1gece|1GECE]], [[1ppo|1PPO]], [[1meg|1MEG]], [[1pcia|1PCIA]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB]</span>
+
-
}}
+
'''Mexicain from Jacaratia mexicana'''
'''Mexicain from Jacaratia mexicana'''
Line 30: Line 27:
[[Category: Oliver-Salvador, M C.]]
[[Category: Oliver-Salvador, M C.]]
[[Category: Soriano-Garcia, M.]]
[[Category: Soriano-Garcia, M.]]
-
[[Category: cysteine protease]]
+
[[Category: Cysteine protease]]
-
[[Category: mexicain]]
+
[[Category: Mexicain]]
-
[[Category: papain-like]]
+
[[Category: Papain-like]]
-
[[Category: peptidase_c1]]
+
[[Category: Peptidase_c1]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 20:09:38 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:05:00 2008''
+

Revision as of 17:09, 3 May 2008

Template:STRUCTURE 2bdz

Mexicain from Jacaratia mexicana


Overview

Mexicain is a 23.7 kDa papain-like cysteine protease from the tropical plant Jacaratia mexicana. Extracted as a mix of proteases from the latex of the fruit, mexicain is isolated after cation-exchange chromatography as the most abundant product. The purified product inhibited with E-64 was crystallized by sitting-drop vapour diffusion in the presence of ethanolamine. Cryoprotected crystals diffracted X-rays from a home source to 1.98 A and belong to the monoclinic space group P2(1), with unit-cell parameters a = 57.36, b = 90.45, c = 80.39 A, beta = 92.64 degrees . The asymmetric unit contains four molecules of mexicain, with a corresponding crystal volume per protein weight (V(M)) of 2.24 A(3) Da(-1) and a solvent content of 45% by volume. A molecular-replacement model has been determined and refinement is in progress.

About this Structure

2BDZ is a Single protein structure of sequence from Jacaratia mexicana. Full crystallographic information is available from OCA.

Reference

Purification, crystallization and preliminary X-ray analysis of mexicain., Oliver-Salvador MC, Gonzalez-Ramirez LA, Gavira JA, Soriano-Garcia M, Garcia-Ruiz JM, Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):2058-60. Epub 2004, Oct 20. PMID:15502326 Page seeded by OCA on Sat May 3 20:09:38 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools