2bj6

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[[Image:2bj6.gif|left|200px]]
[[Image:2bj6.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 2bj6 |SIZE=350|CAPTION= <scene name='initialview01'>2bj6</scene>, resolution 2.60&Aring;
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The line below this paragraph, containing "STRUCTURE_2bj6", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+G'>AC1</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=6HA:1&#39;,5&#39;-ANHYDRO-2&#39;,3&#39;-DIDEOXY-2&#39;-(ADENIN-9-YL)-6&#39;-O-PHOSPHORYL-D-ARABINO-HEXITOL'>6HA</scene>, <scene name='pdbligand=6HC:1&#39;,5&#39;-ANHYDRO-2&#39;,3&#39;-DIDEOXY-2&#39;-(CYTOSIN-1-YL)-6&#39;-O-PHOSPHORYL-D-ARABINO-HEXITOL'>6HC</scene>, <scene name='pdbligand=6HG:1&#39;,5&#39;-ANHYDRO-2&#39;,3&#39;-DIDEOXY-2&#39;-(GUANIN-9-YL)-6&#39;-O-PHOSPHORYL-D-ARABINO-HEXITOL'>6HG</scene>, <scene name='pdbligand=6HT:1&#39;,5&#39;-ANHYDRO-2&#39;,3&#39;-DIDEOXY-2&#39;-(THYMIN-1-YL)-6&#39;-O-PHOSPHORYL-D-ARABINO-HEXITOL'>6HT</scene>, <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE=
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|DOMAIN=
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{{STRUCTURE_2bj6| PDB=2bj6 | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bj6 OCA], [http://www.ebi.ac.uk/pdbsum/2bj6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bj6 RCSB]</span>
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}}
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'''CRYSTAL STRUCTURE OF A DECAMERIC HNA-RNA HYBRID'''
'''CRYSTAL STRUCTURE OF A DECAMERIC HNA-RNA HYBRID'''
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==About this Structure==
==About this Structure==
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2BJ6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ6 OCA].
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2BJ6 is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ6 OCA].
==Reference==
==Reference==
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[[Category: Saenger, W.]]
[[Category: Saenger, W.]]
[[Category: Straeter, N.]]
[[Category: Straeter, N.]]
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[[Category: backbone modification]]
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[[Category: Backbone modification]]
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[[Category: dna,rna,hna,hexitol nucleic acid,hybrid,duplex,modified nucleic acid,antisense]]
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[[Category: Dna,rna,hna,hexitol nucleic acid,hybrid,duplex,modified nucleic acid,antisense]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 20:21:47 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:07:12 2008''
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Revision as of 17:21, 3 May 2008

Template:STRUCTURE 2bj6

CRYSTAL STRUCTURE OF A DECAMERIC HNA-RNA HYBRID


Overview

The crystal structure of a decameric HNA/RNA (HNA = 2',3'-dideoxy-1',5'-anhydro-d-arabinohexitol nucleic acid) hybrid with the RNA sequence 5'-GGCAUUACGG-3' is the first crystal structure of a hybrid duplex between a naturally occurring nucleic acid and a strand, which is fully modified to contain a six-membered ring instead of ribose. The presence of four duplex helices in the asymmetric unit allows for a detailed discussion of hydration, which revealed a tighter spinelike backbone hydration for the HNA- than for the RNA-strands. The reinforced backbone hydration is suggested to contribute significantly to the exceptional stability of HNA-containing duplexes and might be one of the causes for the evolutionary preference for ribose-derived nucleic acids.

About this Structure

2BJ6 is a Single protein structure. Full crystallographic information is available from OCA.

Reference

Reinforced HNA backbone hydration in the crystal structure of a decameric HNA/RNA hybrid., Maier T, Przylas I, Strater N, Herdewijn P, Saenger W, J Am Chem Soc. 2005 Mar 9;127(9):2937-43. PMID:15740130 Page seeded by OCA on Sat May 3 20:21:47 2008

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