2bkb

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[[Image:2bkb.jpg|left|200px]]
[[Image:2bkb.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2bkb |SIZE=350|CAPTION= <scene name='initialview01'>2bkb</scene>, resolution 1.70&Aring;
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The line below this paragraph, containing "STRUCTURE_2bkb", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Fe2+Binding+Site+For+Chain+D'>AC1</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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-->
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|DOMAIN=
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{{STRUCTURE_2bkb| PDB=2bkb | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bkb OCA], [http://www.ebi.ac.uk/pdbsum/2bkb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bkb RCSB]</span>
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}}
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'''Q69E-FESOD'''
'''Q69E-FESOD'''
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[[Category: Rodgers, D W.]]
[[Category: Rodgers, D W.]]
[[Category: Yikilmaz, E.]]
[[Category: Yikilmaz, E.]]
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[[Category: h-bond network]]
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[[Category: H-bond network]]
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[[Category: iron redox tuning]]
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[[Category: Iron redox tuning]]
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[[Category: mutant]]
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[[Category: Mutant]]
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[[Category: oxidoreductase]]
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[[Category: Oxidoreductase]]
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[[Category: superoxide dismutase]]
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[[Category: Superoxide dismutase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 20:24:23 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:07:40 2008''
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Revision as of 17:24, 3 May 2008

Template:STRUCTURE 2bkb

Q69E-FESOD


Overview

Fe-containing superoxide dismutase's active site Fe is coordinated by a solvent molecule, whose protonation state is coupled to the Fe oxidation state. Thus, we have proposed that H-bonding between glutamine 69 and this solvent molecule can strongly influence the redox activity of the Fe in superoxide dismutase (SOD). We show here that mutation of this Gln to His subtly alters the active site structure but preserves 30% activity. In contrast, mutation to Glu otherwise preserves the active site structure but inactivates the enzyme. Thus, enzyme function correlates not with atom positions but with residue identity (chemistry), in this case. We observe strong destabilization of the Q69E-FeSOD oxidized state relative to the reduced state and intermediate destabilization of oxidized Q69H-FeSOD. Indeed, redox titrations indicate that mutation of Gln69 to His increases the reduction potential by 240 mV, whereas mutation to Glu appears to increase it by more than 660 mV. We find that this suffices to explain the mutants' loss of activity, although additional factors may also contribute. The strongly elevated reduction potential of Q69E-FeSOD may reflect reorganization of the active site H-bonding network, including possible reversal of the polarity of the key H-bond between residue 69 and coordinated solvent.

About this Structure

2BKB is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

The crucial importance of chemistry in the structure-function link: manipulating hydrogen bonding in iron-containing superoxide dismutase., Yikilmaz E, Rodgers DW, Miller AF, Biochemistry. 2006 Jan 31;45(4):1151-61. PMID:16430211 Page seeded by OCA on Sat May 3 20:24:23 2008

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