2dij

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[[Image:2dij.jpg|left|200px]]
[[Image:2dij.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2dij |SIZE=350|CAPTION= <scene name='initialview01'>2dij</scene>, resolution 2.6&Aring;
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The line below this paragraph, containing "STRUCTURE_2dij", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=16:First+Maltose+Binding+Site'>16</scene>, <scene name='pdbsite=26:Second+Maltose+Binding+Site'>26</scene>, <scene name='pdbsite=36:Third+Maltose+Binding+Site.+This+Site+Also+Includes+Resi+...'>36</scene>, <scene name='pdbsite=CA1:First+Ca+Binding+Site'>CA1</scene>, <scene name='pdbsite=CA2:Second+Ca+Binding+Site'>CA2</scene> and <scene name='pdbsite=CAT:Catalytic+Site'>CAT</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=ADH:1-AMINO-2,3-DIHYDROXY-5-HYDROXYMETHYL+CYCLOHEX-5-ENE'>ADH</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=G6D:6-DEOXY-ALPHA-D-GLUCOSE'>G6D</scene>, <scene name='pdbligand=GLC:GLUCOSE'>GLC</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Cyclomaltodextrin_glucanotransferase Cyclomaltodextrin glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.19 2.4.1.19] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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-->
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|DOMAIN=
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{{STRUCTURE_2dij| PDB=2dij | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dij OCA], [http://www.ebi.ac.uk/pdbsum/2dij PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2dij RCSB]</span>
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}}
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'''COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE'''
'''COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE'''
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==About this Structure==
==About this Structure==
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2DIJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_circulans Bacillus circulans]. This structure supersedes the now removed PDB entry 1DIJ. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DIJ OCA].
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2DIJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_circulans Bacillus circulans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1dij 1dij]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DIJ OCA].
==Reference==
==Reference==
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[[Category: Strokopytov, B V.]]
[[Category: Strokopytov, B V.]]
[[Category: Uitdehaag, J C.M.]]
[[Category: Uitdehaag, J C.M.]]
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[[Category: glycosyltransferase]]
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[[Category: Glycosyltransferase]]
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[[Category: transferase]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 00:29:19 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:35:09 2008''
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Revision as of 21:29, 3 May 2008

Image:2dij.jpg

Template:STRUCTURE 2dij

COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE


Overview

Crystals of the Y195F mutant of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 were subjected to a double soaking procedure, in which they were first soaked in a solution containing the inhibitor acarbose and subsequently in a solution containing maltohexaose. The refined structure of the resulting protein-carbohydrate complex has final crystallographic and free R-factors for data in the 8-2.6 angstrom resolution range of 15.0% and 21.5%, respectively, and reveals that a new inhibitor, composed of nine saccharide residues, is bound in the active site. The first four residues correspond to acarbose and occupy the same subsites near the catalytic residues as observed in the previously reported acarbose-enzyme complex [Strokopytov et al. (1995) Biochemistry 34, 2234-2240]. An oliogosaccharide consisting of five glucose residues has been coupled to the nonreducing end of acarbose. At the fifth residue the polysaccharide chain makes a sharp turn, allowing it to interact with residues Tyr89, Phe195, and Asn193 and a flexible loop formed by residues 145-148. On the basis of the refined model of the complex an explanation is given for the product specificity of CGTases.

About this Structure

2DIJ is a Single protein structure of sequence from Bacillus circulans. This structure supersedes the now removed PDB entry 1dij. Full crystallographic information is available from OCA.

Reference

Structure of cyclodextrin glycosyltransferase complexed with a maltononaose inhibitor at 2.6 angstrom resolution. Implications for product specificity., Strokopytov B, Knegtel RM, Penninga D, Rozeboom HJ, Kalk KH, Dijkhuizen L, Dijkstra BW, Biochemistry. 1996 Apr 2;35(13):4241-9. PMID:8672460 Page seeded by OCA on Sun May 4 00:29:19 2008

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