2e7f

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[[Image:2e7f.jpg|left|200px]]
[[Image:2e7f.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2e7f |SIZE=350|CAPTION= <scene name='initialview01'>2e7f</scene>, resolution 2.20&Aring;
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The line below this paragraph, containing "STRUCTURE_2e7f", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=C2F:5-METHYL-5,6,7,8-TETRAHYDROFOLIC+ACID'>C2F</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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|GENE= MeTr, acsE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1525 Moorella thermoacetica])
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|DOMAIN=
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{{STRUCTURE_2e7f| PDB=2e7f | SCENE= }}
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|RELATEDENTRY=[[1f6y|1F6Y]], [[1q8j|1Q8J]], [[1aj0|1AJ0]], [[1ad4|1AD4]], [[1tx0|1TX0]], [[1tww|1TWW]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e7f OCA], [http://www.ebi.ac.uk/pdbsum/2e7f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2e7f RCSB]</span>
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}}
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'''5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 Angsrom resolution'''
'''5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 Angsrom resolution'''
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[[Category: Hemmi, H.]]
[[Category: Hemmi, H.]]
[[Category: Ragsdale, S W.]]
[[Category: Ragsdale, S W.]]
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[[Category: corrionoid]]
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[[Category: Corrionoid]]
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[[Category: methyltetrahydrofolate-protein complex]]
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[[Category: Methyltetrahydrofolate-protein complex]]
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[[Category: tim barrel]]
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[[Category: Tim barrel]]
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[[Category: vitamin b12]]
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[[Category: Vitamin b12]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 02:04:25 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:44:49 2008''
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Revision as of 23:04, 3 May 2008

Template:STRUCTURE 2e7f

5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 Angsrom resolution


Overview

The methyltetrahydrofolate (CH(3)-H(4)folate) corrinoid-iron-sulfur protein (CFeSP) methyltransferase (MeTr) catalyzes transfer of the methyl group of CH(3)-H(4)folate to cob(I)amide. This key step in anaerobic CO and CO(2) fixation is similar to the first half-reaction in the mechanisms of other cobalamin-dependent methyltransferases. Methyl transfer requires electrophilic activation of the methyl group of CH(3)-H(4)folate, which includes proton transfer to the N5 group of the pterin ring and poises the methyl group for reaction with the Co(I) nucleophile. The structure of the binary CH(3)-H(4)folate/MeTr complex (revealed here) lacks any obvious proton donor near the N5 group. Instead, an Asn residue and water molecules are found within H-bonding distance of N5. Structural and kinetic experiments described here are consistent with the involvement of an extended H-bonding network in proton transfer to N5 of the folate that includes an Asn (Asn-199 in MeTr), a conserved Asp (Asp-160), and a water molecule. This situation is reminiscent of purine nucleoside phosphorylase, which involves protonation of the purine N7 in the transition state and is accomplished by an extended H-bond network that includes water molecules, a Glu residue, and an Asn residue (Kicska, G. A., Tyler, P. C., Evans, G. B., Furneaux, R. H., Shi, W., Fedorov, A., Lewandowicz, A., Cahill, S. M., Almo, S. C., and Schramm, V. L. (2002) Biochemistry 41, 14489-14498). In MeTr, the Asn residue swings from a distant position to within H-bonding distance of the N5 atom upon CH(3)-H(4)folate binding. An N199A variant exhibits only approximately 20-fold weakened affinity for CH(3)-H(4)folate but a much more marked 20,000-40,000-fold effect on catalysis, suggesting that Asn-199 plays an important role in stabilizing a transition state or high energy intermediate for methyl transfer.

About this Structure

2E7F is a Single protein structure of sequence from Moorella thermoacetica. Full crystallographic information is available from OCA.

Reference

Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases., Doukov TI, Hemmi H, Drennan CL, Ragsdale SW, J Biol Chem. 2007 Mar 2;282(9):6609-18. Epub 2006 Dec 15. PMID:17172470 Page seeded by OCA on Sun May 4 02:04:25 2008

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