2i2s

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[[Image:2i2s.jpg|left|200px]]
[[Image:2i2s.jpg|left|200px]]
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{{Structure
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|PDB= 2i2s |SIZE=350|CAPTION= <scene name='initialview01'>2i2s</scene>, resolution 2.30&Aring;
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The line below this paragraph, containing "STRUCTURE_2i2s", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MNA:2-O-METHYL-5-N-ACETYL-ALPHA-D-+NEURAMINIC+ACID'>MNA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|GENE=
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{{STRUCTURE_2i2s| PDB=2i2s | SCENE= }}
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|RELATEDENTRY=[[2dwr|2DWR]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i2s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i2s OCA], [http://www.ebi.ac.uk/pdbsum/2i2s PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2i2s RCSB]</span>
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'''Crystal Structure of the porcine CRW-8 rotavirus VP8* carbohydrate-recognising domain'''
'''Crystal Structure of the porcine CRW-8 rotavirus VP8* carbohydrate-recognising domain'''
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==About this Structure==
==About this Structure==
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2I2S is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Porcine_rotavirus Porcine rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I2S OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I2S OCA].
==Reference==
==Reference==
Insight into host cell carbohydrate-recognition by human and porcine rotavirus from crystal structures of the virion spike associated carbohydrate-binding domain (VP8*)., Blanchard H, Yu X, Coulson BS, von Itzstein M, J Mol Biol. 2007 Apr 6;367(4):1215-26. Epub 2007 Jan 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17306299 17306299]
Insight into host cell carbohydrate-recognition by human and porcine rotavirus from crystal structures of the virion spike associated carbohydrate-binding domain (VP8*)., Blanchard H, Yu X, Coulson BS, von Itzstein M, J Mol Biol. 2007 Apr 6;367(4):1215-26. Epub 2007 Jan 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17306299 17306299]
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[[Category: Porcine rotavirus]]
 
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[[Category: Protein complex]]
 
[[Category: Blanchard, H.]]
[[Category: Blanchard, H.]]
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[[Category: beta-sandwich]]
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[[Category: Beta-sandwich]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 07:00:14 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:38:55 2008''
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Revision as of 04:00, 4 May 2008

Template:STRUCTURE 2i2s

Crystal Structure of the porcine CRW-8 rotavirus VP8* carbohydrate-recognising domain


Overview

Rotavirus infection leads to the death of half a million children annually. The exact specifics of interaction between rotavirus particles and host cells enabling invasion and infection have remained elusive. Host cell oligosaccharides are critical components, and their involvement aids the virus in cell-recognition and attachment, as well as dictation of the remarkable host-specificity that rotaviruses demonstrate. Interaction between the rotavirus spike-protein carbohydrate-binding domain (VP8*) and cell surface oligosaccharides facilitate virus recognition of host cells and attachment. Rotaviruses are considered, controversially, to recognise vastly different carbohydrate structures and either with incorporation of terminal sialic acid or without, as assessed by their ability to infect cells that have been pre-treated with sialidases. Herein, the X-ray crystallographic structures of VP8* from the sialidase insensitive Wa and the sialidase sensitive CRW-8 rotavirus strains that cause debilitating gastroenteritis in human and pig are reported. Striking differences are apparent regarding recognition of the sialic acid derivative methyl alpha-D-N-acetylneuraminide, presenting the first experimental evidence of the inability of the human rotavirus strain to bind this monosaccharide, that correlates with Wa and CRW-8 recognising sialidase-resistant and sialidase-sensitive receptors, respectively. Identified are structural features that provide insight in attainment of substrate specificity exhibited by porcine strains as compared to rhesus rotavirus. Revealed in the CRW-8 VP8* structure is an additional bound ligand that intriguingly, is within a cleft located equivalent to the carbohydrate-binding region of galectins, and is suggestive of a new region for interaction with cell-surface carbohydrates. This novel result and detailed comparison of our representative sialidase-sensitive CRW-8 and insensitive Wa VP8* structures with those reported leads to our hypothesis that this groove is used for binding carbohydrates, and that for the human strains, as for other sialidase-insensitive strains could represent a major oligosaccharide-binding region.

About this Structure

Full crystallographic information is available from OCA.

Reference

Insight into host cell carbohydrate-recognition by human and porcine rotavirus from crystal structures of the virion spike associated carbohydrate-binding domain (VP8*)., Blanchard H, Yu X, Coulson BS, von Itzstein M, J Mol Biol. 2007 Apr 6;367(4):1215-26. Epub 2007 Jan 13. PMID:17306299 Page seeded by OCA on Sun May 4 07:00:14 2008

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