2jyl
From Proteopedia
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'''Solution Structure of A Double Mutant of The Carboxy-terminal Dimerization Domain of The HIV-1 Capsid Protein''' | '''Solution Structure of A Double Mutant of The Carboxy-terminal Dimerization Domain of The HIV-1 Capsid Protein''' | ||
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[[Category: Wong, H C.]] | [[Category: Wong, H C.]] | ||
[[Category: 3d-nmr]] | [[Category: 3d-nmr]] | ||
| - | [[Category: | + | [[Category: Aid]] |
| - | [[Category: | + | [[Category: Aspartyl protease]] |
| - | [[Category: | + | [[Category: Capsid maturation]] |
| - | [[Category: | + | [[Category: Carboxy-terminal]] |
| - | + | [[Category: Core protein]] | |
| - | [[Category: | + | [[Category: Ctd]] |
| - | [[Category: | + | [[Category: Cytoplasm]] |
| - | [[Category: | + | [[Category: Dimerization domain]] |
| - | [[Category: | + | [[Category: Dna integration]] |
| - | [[Category: | + | [[Category: Dna recombination]] |
| - | [[Category: | + | [[Category: Dna-directed dna polymerase]] |
| - | [[Category: | + | [[Category: Double mutant]] |
| - | [[Category: | + | [[Category: Endonuclease]] |
| - | [[Category: | + | [[Category: Hiv-1]] |
| - | [[Category: | + | [[Category: Hydrolase]] |
| - | [[Category: | + | [[Category: Lipoprotein]] |
| - | [[Category: | + | [[Category: Magnesium]] |
| - | [[Category: | + | [[Category: Membrane]] |
| - | [[Category: | + | [[Category: Metal-binding]] |
| - | [[Category: | + | [[Category: Monomer structure]] |
| - | [[Category: | + | [[Category: Multifunctional enzyme]] |
| - | [[Category: | + | [[Category: Myristate]] |
| - | [[Category: | + | [[Category: Nmr]] |
| - | [[Category: | + | [[Category: Nuclease]] |
| - | [[Category: | + | [[Category: Nucleotidyltransferase]] |
| - | [[Category: | + | [[Category: Nucleus]] |
| - | [[Category: | + | [[Category: Phosphoprotein]] |
| - | [[Category: | + | [[Category: Protease]] |
| - | [[Category: | + | [[Category: Rna-binding]] |
| - | [[Category: | + | [[Category: Rna-directed dna polymerase]] |
| - | [[Category: | + | [[Category: Transferase]] |
| - | [[Category: | + | [[Category: Viral nucleoprotein]] |
| - | [[Category: | + | [[Category: Viral protein]] |
| - | [[Category: | + | [[Category: Virion]] |
| - | [[Category: | + | [[Category: Zinc]] |
| - | [[Category: | + | [[Category: Zinc-finger]] |
| - | [[Category: | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 09:24:23 2008'' |
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Revision as of 06:24, 4 May 2008
Solution Structure of A Double Mutant of The Carboxy-terminal Dimerization Domain of The HIV-1 Capsid Protein
Overview
As in other retroviruses, the HIV-1 capsid (CA) protein is composed of two domains, the N-terminal domain (NTD) and the C-terminal domain (CTD), joined by a flexible linker. The dimerization of the CTD is thought to be a critical step in the assembly of the immature and mature viral capsids. The precise nature of the functional form of CTD dimerization interface has been a subject of considerable interest. Previously, the CTD dimer was thought to involve a face-to-face dimerization observed in the early crystallographic studies. Recently, the crystallographic structure for a domain-swapped CTD dimer has been determined. This dimer, with an entirely different interface that includes the major homology region (MHR) has been suggested as the functional form during the Gag assembly. The structure determination of the monomeric wt CTD of HIV-1 has not been possible because of the monomer-dimer equilibrium in solution. We report the NMR structure of the [W184A/M185A]-CTD mutant in its monomeric form. These mutations interfere with dimerization without abrogating the assembly activity of Gag and CA. The NMR structure shows some important differences compared to the CTD structure in the face-to-face dimer. Notably, the helix-2 is much shorter, and the kink seen in the crystal structure of the wt CTD in the face-to-face dimer is absent. These NMR studies suggest that dimerization-induced conformational changes may be present in the two crystal structures of the CTD dimers and also suggest a mechanism that can simultaneously accommodate both of the distinctly different dimer models playing functional roles during the Gag assembly of the immature capsids.
About this Structure
2JYL is a Single protein structure of sequence from Human immunodeficiency virus 1. Full crystallographic information is available from OCA.
Reference
Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein(,)., Wong HC, Shin R, Krishna NR, Biochemistry. 2008 Feb 26;47(8):2289-97. Epub 2008 Jan 26. PMID:18220423 Page seeded by OCA on Sun May 4 09:24:23 2008
Categories: Human immunodeficiency virus 1 | Single protein | Krishna, N R. | Shin, R. | Wong, H C. | 3d-nmr | Aid | Aspartyl protease | Capsid maturation | Carboxy-terminal | Core protein | Ctd | Cytoplasm | Dimerization domain | Dna integration | Dna recombination | Dna-directed dna polymerase | Double mutant | Endonuclease | Hiv-1 | Hydrolase | Lipoprotein | Magnesium | Membrane | Metal-binding | Monomer structure | Multifunctional enzyme | Myristate | Nmr | Nuclease | Nucleotidyltransferase | Nucleus | Phosphoprotein | Protease | Rna-binding | Rna-directed dna polymerase | Transferase | Viral nucleoprotein | Viral protein | Virion | Zinc | Zinc-finger
