2pbj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2pbj.jpg|left|200px]]
[[Image:2pbj.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2pbj |SIZE=350|CAPTION= <scene name='initialview01'>2pbj</scene>, resolution 2.8&Aring;
+
The line below this paragraph, containing "STRUCTURE_2pbj", creates the "Structure Box" on the page.
-
|SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+A+475'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+B+475'>AC2</scene>, <scene name='pdbsite=AC3:Cl+Binding+Site+For+Residue+C+475'>AC3</scene>, <scene name='pdbsite=AC4:Cl+Binding+Site+For+Residue+D+475'>AC4</scene>, <scene name='pdbsite=AC5:Hem+Binding+Site+For+Residue+A+476'>AC5</scene>, <scene name='pdbsite=AC6:Gsh+Binding+Site+For+Residue+A+477'>AC6</scene>, <scene name='pdbsite=AC7:Hem+Binding+Site+For+Residue+B+476'>AC7</scene>, <scene name='pdbsite=AC8:Gsh+Binding+Site+For+Residue+B+477'>AC8</scene>, <scene name='pdbsite=AC9:Hem+Binding+Site+For+Residue+C+476'>AC9</scene>, <scene name='pdbsite=BC1:Gsh+Binding+Site+For+Residue+C+477'>BC1</scene>, <scene name='pdbsite=BC2:Hem+Binding+Site+For+Residue+D+476'>BC2</scene> and <scene name='pdbsite=BC3:Gsh+Binding+Site+For+Residue+D+477'>BC3</scene>
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Prostaglandin-E_synthase Prostaglandin-E synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.3 5.3.99.3] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE= mPGES-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9541 Macaca fascicularis])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_2pbj| PDB=2pbj | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbj OCA], [http://www.ebi.ac.uk/pdbsum/2pbj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pbj RCSB]</span>
+
-
}}
+
'''GSH-heme bound microsomal prostaglandin E synthase'''
'''GSH-heme bound microsomal prostaglandin E synthase'''
Line 28: Line 25:
[[Category: Takusagawa, F.]]
[[Category: Takusagawa, F.]]
[[Category: Yamada, T.]]
[[Category: Yamada, T.]]
-
[[Category: dual function enzyme]]
+
[[Category: Dual function enzyme]]
-
[[Category: gsh-heme bound enzyme]]
+
[[Category: Gsh-heme bound enzyme]]
-
[[Category: isomerase]]
+
[[Category: Isomerase]]
-
[[Category: lyase]]
+
[[Category: Lyase]]
-
[[Category: prostaglandin e synthase]]
+
[[Category: Prostaglandin e synthase]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 12:47:06 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:33:54 2008''
+

Revision as of 09:47, 4 May 2008

Template:STRUCTURE 2pbj

GSH-heme bound microsomal prostaglandin E synthase


Overview

Prostaglandin E2 synthase (PGES) catalyzes the isomerization of PGH2 to PGE2. PGES type 2 (mPGES-2) is a membrane-associated enzyme, whose N-terminal section is apparently inserted into the lipid bilayer. Both intact and N-terminal truncated enzymes have been isolated and have similar catalytic activity. The recombinant N-terminal truncated enzyme purified from Escherichia coli HB101 grown in LB medium containing delta-aminolevulinate and Fe(NO3)3 has a red color, while the same enzyme purified from the same E. coli grown in minimal medium has no color. The red-colored enzyme has been characterized by mass, fluorescence, and EPR spectroscopies and X-ray crystallography. The enzyme is found to contain bound glutathione (GSH) and heme. GSH binds to the active site with six H-bonds, while a heme is complexed with bound GSH forming a S-Fe coordination bond with no polar interaction with mPGES-2. There is a large open space between the heme and the protein, where a PGH2 might be able to bind. The heme dissociation constant is 0.53 microM, indicating that mPGES-2 has relatively strong heme affinity. Indeed, expression of mPGES-2 in E. coli stimulates heme biosynthesis. Although mPGES-2 has been reported to be a GSH-independent PGES, the crystal structure and sequence analysis indicate that mPGES-2 is a GSH-binding protein. The GSH-heme complex-bound enzyme (mPGES-2h) catalyzes formation of 12(S)-hydroxy-5(Z),8(E),10(E)-heptadecatrienoic acid and malondialdehyde from PGH2, but not formation of PGE2. The following kinetic parameters at 37 degrees C were determined: KM = 56 microM, kcat = 63 s-1, and kcat/KM = 1.1 x 10(6) M-1 s-1. They suggest that mPGES-2h has significant catalytic activity for PGH2 degradation. It is possible that both GSH-heme complex-free and -bound enzymes are present in the same tissues. mPGES-2 in heme-rich liver is most likely to become the form of mPGES-2h and might be involved in degradation reactions similar to that of cytochrome P450. Since mPGES-2 is an isomerase and mPGES-2h is a lyase, mPGES-2 cannot simply be classified into one of six classes set by the International Union of Biochemistry and Molecular Biology.

About this Structure

2PBJ is a Single protein structure of sequence from Macaca fascicularis. Full crystallographic information is available from OCA.

Reference

PGH2 degradation pathway catalyzed by GSH-heme complex bound microsomal prostaglandin E2 synthase type 2: the first example of a dual-function enzyme., Yamada T, Takusagawa F, Biochemistry. 2007 Jul 17;46(28):8414-24. Epub 2007 Jun 22. PMID:17585783 Page seeded by OCA on Sun May 4 12:47:06 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools