2pij

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[[Image:2pij.jpg|left|200px]]
[[Image:2pij.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2pij |SIZE=350|CAPTION= <scene name='initialview01'>2pij</scene>, resolution 1.700&Aring;
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The line below this paragraph, containing "STRUCTURE_2pij", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+501'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+502'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+B+503'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+504'>AC4</scene>, <scene name='pdbsite=AC5:Bct+Binding+Site+For+Residue+A+601'>AC5</scene> and <scene name='pdbsite=AC6:Dtt+Binding+Site+For+Residue+B+701'>AC6</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE= Prophage Pfl 6 Cro ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens])
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-->
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|DOMAIN=
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{{STRUCTURE_2pij| PDB=2pij | SCENE= }}
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|RELATEDENTRY=[[3bd1|3BD1]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pij OCA], [http://www.ebi.ac.uk/pdbsum/2pij PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pij RCSB]</span>
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}}
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'''Structure of the Cro protein from prophage Pfl 6 in Pseudomonas fluorescens Pf-5'''
'''Structure of the Cro protein from prophage Pfl 6 in Pseudomonas fluorescens Pf-5'''
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==About this Structure==
==About this Structure==
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2PIJ is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PIJ OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PIJ OCA].
==Reference==
==Reference==
Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds., Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH, Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2343-8. Epub 2008 Jan 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18227506 18227506]
Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds., Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH, Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2343-8. Epub 2008 Jan 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18227506 18227506]
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[[Category: Protein complex]]
 
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[[Category: Pseudomonas fluorescens]]
 
[[Category: Cordes, M H.J.]]
[[Category: Cordes, M H.J.]]
[[Category: Montfort, W R.]]
[[Category: Montfort, W R.]]
[[Category: Roberts, S A.]]
[[Category: Roberts, S A.]]
[[Category: Roessler, C G.]]
[[Category: Roessler, C G.]]
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[[Category: helix-turn-helix]]
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[[Category: Helix-turn-helix]]
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[[Category: prophage]]
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[[Category: Prophage]]
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[[Category: structural evolution]]
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[[Category: Structural evolution]]
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[[Category: transcription factor]]
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[[Category: Transcription factor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:10:50 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:36:20 2008''
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Revision as of 10:10, 4 May 2008

Image:2pij.jpg

Template:STRUCTURE 2pij

Structure of the Cro protein from prophage Pfl 6 in Pseudomonas fluorescens Pf-5


Overview

Proteins that share common ancestry may differ in structure and function because of divergent evolution of their amino acid sequences. For a typical diverse protein superfamily, the properties of a few scattered members are known from experiment. A satisfying picture of functional and structural evolution in relation to sequence changes, however, may require characterization of a larger, well chosen subset. Here, we employ a "stepping-stone" method, based on transitive homology, to target sequences intermediate between two related proteins with known divergent properties. We apply the approach to the question of how new protein folds can evolve from preexisting folds and, in particular, to an evolutionary change in secondary structure and oligomeric state in the Cro family of bacteriophage transcription factors, initially identified by sequence-structure comparison of distant homologs from phages P22 and lambda. We report crystal structures of two Cro proteins, Xfaso 1 and Pfl 6, with sequences intermediate between those of P22 and lambda. The domains show 40% sequence identity but differ by switching of alpha-helix to beta-sheet in a C-terminal region spanning approximately 25 residues. Sedimentation analysis also suggests a correlation between helix-to-sheet conversion and strengthened dimerization.

About this Structure

Full crystallographic information is available from OCA.

Reference

Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds., Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH, Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2343-8. Epub 2008 Jan 28. PMID:18227506 Page seeded by OCA on Sun May 4 13:10:50 2008

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