2plb

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[[Image:2plb.gif|left|200px]]
[[Image:2plb.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 2plb |SIZE=350|CAPTION= <scene name='initialview01'>2plb</scene>, resolution 1.60&Aring;
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The line below this paragraph, containing "STRUCTURE_2plb", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Spm+Binding+Site+For+Residue+B+20'>AC1</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE=
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|DOMAIN=
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{{STRUCTURE_2plb| PDB=2plb | SCENE= }}
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|RELATEDENTRY=[[115d|115D]], [[1vj4|1VJ4]], [[2pkv|2PKV]], [[2pl4|2PL4]], [[2pl8|2PL8]], [[2plo|2PLO]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2plb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2plb OCA], [http://www.ebi.ac.uk/pdbsum/2plb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2plb RCSB]</span>
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}}
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'''D(GTATACC) under hydrostatic pressure of 1.39 GPa'''
'''D(GTATACC) under hydrostatic pressure of 1.39 GPa'''
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==About this Structure==
==About this Structure==
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2PLB is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLB OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLB OCA].
==Reference==
==Reference==
Adaptation of the base-paired double-helix molecular architecture to extreme pressure., Girard E, Prange T, Dhaussy AC, Migianu-Griffoni E, Lecouvey M, Chervin JC, Mezouar M, Kahn R, Fourme R, Nucleic Acids Res. 2007;35(14):4800-8. Epub 2007 Jul 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17617642 17617642]
Adaptation of the base-paired double-helix molecular architecture to extreme pressure., Girard E, Prange T, Dhaussy AC, Migianu-Griffoni E, Lecouvey M, Chervin JC, Mezouar M, Kahn R, Fourme R, Nucleic Acids Res. 2007;35(14):4800-8. Epub 2007 Jul 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17617642 17617642]
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[[Category: Protein complex]]
 
[[Category: Fourme, R.]]
[[Category: Fourme, R.]]
[[Category: Girard, E.]]
[[Category: Girard, E.]]
[[Category: Kahn, R.]]
[[Category: Kahn, R.]]
[[Category: Prange, T.]]
[[Category: Prange, T.]]
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[[Category: crystal structure]]
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[[Category: Crystal structure]]
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[[Category: dna]]
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[[Category: Dna]]
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[[Category: high-pressure]]
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[[Category: High-pressure]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:21:04 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:37:30 2008''
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Revision as of 10:21, 4 May 2008

Template:STRUCTURE 2plb

D(GTATACC) under hydrostatic pressure of 1.39 GPa


Overview

The behaviour of the d(GGTATACC) oligonucleotide has been investigated by X-ray crystallography at 295 K in the range from ambient pressure to 2 GPa (approximately 20,000 atm). Four 3D-structures of the A-DNA form (at ambient pressure, 0.55, 1.09 and 1.39 GPa) were refined at 1.60 or 1.65 A resolution. In addition to the diffraction pattern of the A-form, the broad meridional streaks previously explained by occluded B-DNA octamers within the channels of the crystalline A-form matrix were observed up to at least 2 GPa. This work highlights an important property of nucleic acids, their capability to withstand very high pressures, while keeping in such conditions a nearly invariant geometry of base pairs that store and carry genetic information. The double-helix base-paired architecture behaves as a molecular spring, which makes it especially adapted to very harsh conditions. These features may have contributed to the emergence of a RNA World at prebiotic stage.

About this Structure

Full crystallographic information is available from OCA.

Reference

Adaptation of the base-paired double-helix molecular architecture to extreme pressure., Girard E, Prange T, Dhaussy AC, Migianu-Griffoni E, Lecouvey M, Chervin JC, Mezouar M, Kahn R, Fourme R, Nucleic Acids Res. 2007;35(14):4800-8. Epub 2007 Jul 7. PMID:17617642 Page seeded by OCA on Sun May 4 13:21:04 2008

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