2vdb

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[[Image:2vdb.jpg|left|200px]]
[[Image:2vdb.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2vdb |SIZE=350|CAPTION= <scene name='initialview01'>2vdb</scene>, resolution 2.515&Aring;
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The line below this paragraph, containing "STRUCTURE_2vdb", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Dka+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Dka+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Dka+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Dka+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:Dka+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:Dka+Binding+Site+For+Chain+A'>AC6</scene> and <scene name='pdbsite=AC7:Nps+Binding+Site+For+Chain+A'>AC7</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=NPS:(2S)-2-(6-METHOXYNAPHTHALEN-2-YL)PROPANOIC+ACID'>NPS</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE=
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-->
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|DOMAIN=
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{{STRUCTURE_2vdb| PDB=2vdb | SCENE= }}
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|RELATEDENTRY=[[1bm0|1BM0]], [[1e7a|1E7A]], [[1e7e|1E7E]], [[1e7g|1E7G]], [[1gni|1GNI]], [[1h9z|1H9Z]], [[1ha2|1HA2]], [[1hk1|1HK1]], [[1hk4|1HK4]], [[1hk5|1HK5]], [[1tf0|1TF0]], [[1uor|1UOR]], [[1ysx|1YSX]], [[2bx8|2BX8]], [[2bxa|2BXA]], [[2bxb|2BXB]], [[2bxc|2BXC]], [[2bxd|2BXD]], [[2bxi|2BXI]], [[2bxo|2BXO]], [[2bxq|2BXQ]], [[1ao6|1AO6]], [[1bj5|1BJ5]], [[1bke|1BKE]], [[1e78|1E78]], [[1e7b|1E7B]], [[1e7c|1E7C]], [[1e7f|1E7F]], [[1e7h|1E7H]], [[1e7i|1E7I]], [[1gnj|1GNJ]], [[1hk2|1HK2]], [[1hk3|1HK3]], [[1n5u|1N5U]], [[1o9x|1O9X]], [[2bxe|2BXE]], [[2bxf|2BXF]], [[2bxg|2BXG]], [[2bxh|2BXH]], [[2bxk|2BXK]], [[2bxl|2BXL]], [[2bxm|2BXM]], [[2bxn|2BXN]], [[2bxp|2BXP]], [[2esg|2ESG]], [[1gab|1GAB]], [[1prb|1PRB]], [[2j5y|2J5Y]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vdb OCA], [http://www.ebi.ac.uk/pdbsum/2vdb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2vdb RCSB]</span>
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}}
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'''STRUCTURE OF HUMAN SERUM ALBUMIN WITH S-NAPROXEN AND THE GA MODULE'''
'''STRUCTURE OF HUMAN SERUM ALBUMIN WITH S-NAPROXEN AND THE GA MODULE'''
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[[Category: Lejon, S.]]
[[Category: Lejon, S.]]
[[Category: Nordberg, P A.]]
[[Category: Nordberg, P A.]]
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[[Category: alternative splicing]]
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[[Category: Alternative splicing]]
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[[Category: bacterial albumin-binding]]
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[[Category: Bacterial albumin-binding]]
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[[Category: cell wall]]
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[[Category: Cell wall]]
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[[Category: cleavage on pair of basic residue]]
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[[Category: Cleavage on pair of basic residue]]
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[[Category: copper]]
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[[Category: Copper]]
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[[Category: disease mutation]]
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[[Category: Disease mutation]]
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[[Category: drug binding]]
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[[Category: Drug binding]]
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[[Category: ga module]]
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[[Category: Ga module]]
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[[Category: glycation]]
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[[Category: Glycation]]
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[[Category: glycoprotein]]
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[[Category: Glycoprotein]]
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[[Category: human serum albumin]]
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[[Category: Human serum albumin]]
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[[Category: lipid-binding]]
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[[Category: Lipid-binding]]
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[[Category: metal-binding]]
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[[Category: Metal-binding]]
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[[Category: naproxen]]
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[[Category: Naproxen]]
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[[Category: peptidoglycan-anchor]]
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[[Category: Peptidoglycan-anchor]]
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[[Category: polymorphism]]
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[[Category: Polymorphism]]
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[[Category: protein binding]]
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[[Category: Protein binding]]
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[[Category: secreted]]
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[[Category: Secreted]]
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[[Category: three-helix bundle]]
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[[Category: Three-helix bundle]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 18:37:50 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:11:09 2008''
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Revision as of 15:37, 4 May 2008

Template:STRUCTURE 2vdb

STRUCTURE OF HUMAN SERUM ALBUMIN WITH S-NAPROXEN AND THE GA MODULE


Overview

The previously determined crystal structure of the bacterial albumin-binding GA module in complex with human serum albumin (HSA) suggested the possibility of utilizing the complex in the study of ligand binding to HSA. As a continuation of these studies, the crystal structure of the HSA-GA complex with the drug molecule naproxen and the fatty acid decanoate bound to HSA has been determined to a resolution of 2.5 A. In terms of drug binding, the structure suggests that the binding of decanoate to the albumin molecule may play a role in making the haemin site in subdomain IB of the albumin molecule available for the binding of naproxen. In addition, structure comparisons with solved structures of HSA and of the HSA-GA complex show that the GA module is capable of binding to different conformations of HSA. The HSA-GA complex therefore emerges as a possible platform for the crystallographic study of specific HSA-drug interactions and of the influence exerted by the presence of fatty acids.

About this Structure

2VDB is a Protein complex structure of sequences from Finegoldia magna and Homo sapiens. Full crystallographic information is available from OCA.

Reference

Structural basis for the binding of naproxen to human serum albumin in the presence of fatty acids and the GA module., Lejon S, Cramer JF, Nordberg P, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Feb 1;64(Pt, 2):64-9. Epub 2008 Jan 18. PMID:18259051 Page seeded by OCA on Sun May 4 18:37:50 2008

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