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3bqd

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[[Image:3bqd.jpg|left|200px]]
[[Image:3bqd.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 3bqd |SIZE=350|CAPTION= <scene name='initialview01'>3bqd</scene>, resolution 2.50&Aring;
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The line below this paragraph, containing "STRUCTURE_3bqd", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Day+Binding+Site+For+Residue+A+301'>AC1</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=DAY:1-[(1R,2R,3AS,3BS,10AR,10BS,11S,12AS)-1,11-DIHYDROXY-2,5,10A,12A-TETRAMETHYL-7-PHENYL-1,2,3,3A,3B,7,10,10A,10B,11,12,12A-DODECAHYDROCYCLOPENTA[5,6]NAPHTHO[1,2-F]INDAZOL-1-YL]-2-HYDROXYETHANONE'>DAY</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= NR3C1, GRL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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-->
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|DOMAIN=
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{{STRUCTURE_3bqd| PDB=3bqd | SCENE= }}
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|RELATEDENTRY=[[1m2z|1M2Z]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bqd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bqd OCA], [http://www.ebi.ac.uk/pdbsum/3bqd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bqd RCSB]</span>
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}}
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'''Doubling the Size of the Glucocorticoid Receptor Ligand Binding Pocket by Deacylcortivazol'''
'''Doubling the Size of the Glucocorticoid Receptor Ligand Binding Pocket by Deacylcortivazol'''
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[[Category: Protein complex]]
[[Category: Protein complex]]
[[Category: Xu, H E.]]
[[Category: Xu, H E.]]
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[[Category: acyltransferase]]
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[[Category: Acyltransferase]]
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[[Category: alternative initiation]]
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[[Category: Alternative initiation]]
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[[Category: alternative splicing]]
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[[Category: Alternative splicing]]
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[[Category: charge clamp]]
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[[Category: Charge clamp]]
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[[Category: chromatin regulator]]
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[[Category: Chromatin regulator]]
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[[Category: chromosomal rearrangement]]
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[[Category: Chromosomal rearrangement]]
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[[Category: coactivator]]
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[[Category: Coactivator]]
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[[Category: cytoplasm]]
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[[Category: Cytoplasm]]
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[[Category: deacylcortivazol]]
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[[Category: Deacylcortivazol]]
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[[Category: dimer interface]]
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[[Category: Dimer interface]]
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[[Category: disease mutation]]
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[[Category: Disease mutation]]
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[[Category: dna-binding]]
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[[Category: Dna-binding]]
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[[Category: glucocorticoid receptor]]
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[[Category: Glucocorticoid receptor]]
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[[Category: hormone binding pocket]]
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[[Category: Hormone binding pocket]]
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[[Category: lipid-binding]]
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[[Category: Lipid-binding]]
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[[Category: metal-binding]]
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[[Category: Metal-binding]]
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[[Category: nuclear receptor coactivator 1 isoform 1]]
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[[Category: Nuclear receptor coactivator 1 isoform 1]]
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[[Category: nucleus]]
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[[Category: Nucleus]]
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[[Category: phosphoprotein]]
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[[Category: Phosphoprotein]]
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[[Category: polymorphism]]
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[[Category: Polymorphism]]
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[[Category: protein binding]]
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[[Category: Protein binding]]
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[[Category: proto-oncogene]]
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[[Category: Proto-oncogene]]
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[[Category: pseudohermaphroditism]]
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[[Category: Pseudohermaphroditism]]
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[[Category: src1]]
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[[Category: Src1]]
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[[Category: steroid-binding]]
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[[Category: Steroid-binding]]
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[[Category: transcription]]
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[[Category: Transcription]]
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[[Category: transcription regulation]]
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[[Category: Transcription regulation]]
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[[Category: transferase]]
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[[Category: Transferase]]
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[[Category: ubl conjugation]]
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[[Category: Ubl conjugation]]
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[[Category: Zinc]]
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[[Category: Zinc-finger]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 21:00:39 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:28:20 2008''
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Revision as of 18:00, 4 May 2008

Image:3bqd.jpg

Template:STRUCTURE 3bqd

Doubling the Size of the Glucocorticoid Receptor Ligand Binding Pocket by Deacylcortivazol


Overview

A common feature of nuclear receptor ligand binding domains (LBD) is a helical sandwich fold that nests a ligand binding pocket within the bottom half of the domain. Here we report that the ligand pocket of glucocorticoid receptor (GR) can be continuously extended into the top half of the LBD by binding to deacylcortivazol (DAC), an extremely potent glucocorticoid. It has been puzzling for decades why DAC, which contains a phenylpyrazole replacement at the conserved 3-ketone of steroid hormones that are normally required for activation of their cognate receptors, is a potent GR activator. The crystal structure of the GR LBD bound to DAC and the fourth LXXLL motif of steroid receptor coactivator-1 reveals that the GR ligand binding pocket is expanded to a size of 1070 A(3), effectively doubling the size of the GR DEX-binding pocket of 540 A(3), and yet leaving the structure of the coactivator binding site intact. DAC only occupies approximately 50% of the space of the pocket but makes intricate interactions with the receptor around the phenylpyrazole group that accounts for the high affinity binding of DAC. The dramatic expansion of the DAC-binding pocket thus highlights the conformational adaptability of GR to ligand binding. The new structure also allows docking of various nonsteroidal ligands that can not be fitted into the previous structures, thus providing a new rational template for drug discovery of steroidal and non-steroidal glucocorticoids that can be specifically designed to reach the unoccupied space of the expanded pocket.

About this Structure

3BQD is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Doubling the Size of the Glucocorticoid Receptor Ligand Binding Pocket by Deacylcortivazol., Suino-Powell K, Xu Y, Zhang C, Tao YG, Tolbert WD, Simons SS Jr, Xu HE, Mol Cell Biol. 2007 Dec 26;. PMID:18160712 Page seeded by OCA on Sun May 4 21:00:39 2008

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