4pga

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:4pga.jpg|left|200px]]
[[Image:4pga.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 4pga |SIZE=350|CAPTION= <scene name='initialview01'>4pga</scene>, resolution 1.7&Aring;
+
The line below this paragraph, containing "STRUCTURE_4pga", creates the "Structure Box" on the page.
-
|SITE= <scene name='pdbsite=AS1:Description+Not+Provided'>AS1</scene> and <scene name='pdbsite=AS2:Description+Not+Provided'>AS2</scene>
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutamin-(asparagin-)ase Glutamin-(asparagin-)ase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.38 3.5.1.38] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_4pga| PDB=4pga | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pga OCA], [http://www.ebi.ac.uk/pdbsum/4pga PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=4pga RCSB]</span>
+
-
}}
+
'''GLUTAMINASE-ASPARAGINASE FROM PSEUDOMONAS 7A'''
'''GLUTAMINASE-ASPARAGINASE FROM PSEUDOMONAS 7A'''
Line 23: Line 20:
==Reference==
==Reference==
Ion binding induces closed conformation in Pseudomonas 7A glutaminase-asparaginase (PGA): crystal structure of the PGA-SO4(2-)-NH4+ complex at 1.7 A resolution., Jakob CG, Lewinski K, LaCount MW, Roberts J, Lebioda L, Biochemistry. 1997 Jan 28;36(4):923-31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9020792 9020792]
Ion binding induces closed conformation in Pseudomonas 7A glutaminase-asparaginase (PGA): crystal structure of the PGA-SO4(2-)-NH4+ complex at 1.7 A resolution., Jakob CG, Lewinski K, LaCount MW, Roberts J, Lebioda L, Biochemistry. 1997 Jan 28;36(4):923-31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9020792 9020792]
-
[[Category: Glutamin-(asparagin-)ase]]
 
[[Category: Pseudomonas sp. 7a]]
[[Category: Pseudomonas sp. 7a]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 31: Line 27:
[[Category: Lewinski, K.]]
[[Category: Lewinski, K.]]
[[Category: Roberts, J.]]
[[Category: Roberts, J.]]
-
[[Category: bacterial amidohydrolase]]
+
[[Category: Bacterial amidohydrolase]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:28:07 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:39:47 2008''
+

Revision as of 19:28, 4 May 2008

Template:STRUCTURE 4pga

GLUTAMINASE-ASPARAGINASE FROM PSEUDOMONAS 7A


Overview

Pseudomonas 7A glutaminase-asparaginase (PGA) catalyzes the hydrolysis of D- and L-isomers of glutamine and asparagine. X-ray quality type-1 crystals of PGA have been obtained from 2.0 M ammonium sulfate. The space group is C222(1) with unit-cell dimensions a = 78.62, b = 135.80, and c = 137.88 A. The tetrameric molecule is located on a crystallographic 2-fold axis, and two subunits form the asymmetric portion of the unit cell. The structure was solved by the molecular replacement method and refined at 1.7 A resolution to an R = 19.9% with a good geometry of the model, G = 0.05. The resultant electron density maps enabled us to resolve individual constituent atoms of most residues and introduce minor revisions to the amino acid sequence. The catalytic loop, Thr20-Gly40, is in the closed conformation with excellent electron density in both subunits. A sulfate ion and an ammonium ion are bound in the substrate binding site and interect with the loop. This interaction appears to be responsible for the observed closed conformation. New arguments supporting Thr20 as the catalytic nucleophile in the asparaginase activity are proposed.

About this Structure

4PGA is a Single protein structure of sequence from Pseudomonas sp. 7a. Full crystallographic information is available from OCA.

Reference

Ion binding induces closed conformation in Pseudomonas 7A glutaminase-asparaginase (PGA): crystal structure of the PGA-SO4(2-)-NH4+ complex at 1.7 A resolution., Jakob CG, Lewinski K, LaCount MW, Roberts J, Lebioda L, Biochemistry. 1997 Jan 28;36(4):923-31. PMID:9020792 Page seeded by OCA on Sun May 4 22:28:07 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools