This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1czd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1czd.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:1czd.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1czd| PDB=1czd | SCENE= }}
{{STRUCTURE_1czd| PDB=1czd | SCENE= }}
-
'''CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4'''
+
===CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4===
-
==Overview==
+
<!--
-
The protein encoded by gene 45 of T4 bacteriophage (gene 45 protein or gp45), is responsible for tethering the catalytic subunit of T4 DNA Polymerase to DNA during high-speed replication. Also referred to as a sliding DNA clamp, gp45 is similar in its function to the processivity factors of bacterial and eukaryotic DNA polymerases, the beta-clamp and PCNA, respectively. Crystallographic analysis has shown that the beta-clamp and PCNA form highly symmetrical ring-shaped structures through which duplex DNA can be threaded. Gp45 shares no sequence similarity with beta-clamp or PCNA, and sequence comparisons have not been able to establish whether it adopts a similar structure. We have determined the crystal structure of gp45 from T4 bacteriophage at 2.4 A resolution, using multiple isomorphous replacement. The protein forms a trimeric ring-shaped assembly with overall dimensions that are similar to those of the bacterial and eukaryotic processivity factors. Each monomer of gp45 contains two domains that are very similar in chain fold to those of beta-clamp and PCNA. Despite an overall negative charge, the inner surface of the ring is in a region of positive electrostatic potential, consistent with a mechanism in which DNA is threaded through the ring.
+
The line below this paragraph, {{ABSTRACT_PUBMED_10698628}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 10698628 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_10698628}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Processivity clamp]]
[[Category: Processivity clamp]]
[[Category: Ring-shaped protein]]
[[Category: Ring-shaped protein]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 13:16:17 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 21:51:40 2008''

Revision as of 18:51, 30 June 2008

Image:1czd.png

Template:STRUCTURE 1czd

CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4

Template:ABSTRACT PUBMED 10698628

About this Structure

1CZD is a Single protein structure of sequence from Enterobacteria phage t4. Full crystallographic information is available from OCA.

Reference

Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage., Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J, J Mol Biol. 2000 Mar 10;296(5):1215-23. PMID:10698628

Page seeded by OCA on Mon Jun 30 21:51:40 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1czd"
Personal tools