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1fsv

From Proteopedia

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[[Image:1fsv.jpg|left|200px]]
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{{Seed}}
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[[Image:1fsv.png|left|200px]]
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{{STRUCTURE_1fsv| PDB=1fsv | SCENE= }}
{{STRUCTURE_1fsv| PDB=1fsv | SCENE= }}
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'''FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, MINIMIZED AVERAGE STRUCTURE'''
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===FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, MINIMIZED AVERAGE STRUCTURE===
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==Overview==
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The first fully automated design and experimental validation of a novel sequence for an entire protein is described. A computational design algorithm based on physical chemical potential functions and stereochemical constraints was used to screen a combinatorial library of 1.9 x 10(27) possible amino acid sequences for compatibility with the design target, a betabetaalpha protein motif based on the polypeptide backbone structure of a zinc finger domain. A BLAST search shows that the designed sequence, full sequence design 1 (FSD-1), has very low identity to any known protein sequence. The solution structure of FSD-1 was solved by nuclear magnetic resonance spectroscopy and indicates that FSD-1 forms a compact well-ordered structure, which is in excellent agreement with the design target structure. This result demonstrates that computational methods can perform the immense combinatorial search required for protein design, and it suggests that an unbiased and quantitative algorithm can be used in various structural contexts.
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The line below this paragraph, {{ABSTRACT_PUBMED_9311930}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 9311930 is the PubMed ID number.
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{{ABSTRACT_PUBMED_9311930}}
==About this Structure==
==About this Structure==
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FSV OCA].
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Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FSV OCA].
==Reference==
==Reference==
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[[Category: Computational design]]
[[Category: Computational design]]
[[Category: Novel sequence]]
[[Category: Novel sequence]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 16:43:43 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 03:53:46 2008''

Revision as of 00:53, 1 July 2008

Image:1fsv.png

Template:STRUCTURE 1fsv

FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, MINIMIZED AVERAGE STRUCTURE

Template:ABSTRACT PUBMED 9311930

About this Structure

Full experimental information is available from OCA.

Reference

De novo protein design: fully automated sequence selection., Dahiyat BI, Mayo SL, Science. 1997 Oct 3;278(5335):82-7. PMID:9311930

Page seeded by OCA on Tue Jul 1 03:53:46 2008

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