This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1j3b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1j3b.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:1j3b.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1j3b| PDB=1j3b | SCENE= }}
{{STRUCTURE_1j3b| PDB=1j3b | SCENE= }}
-
'''Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8'''
+
===Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8===
-
==Overview==
+
<!--
-
In order to understand the induced fit and the thermostabilization mechanisms of ATP-dependent phosphoenolpyruvate carboxykinase, the crystal structure of the enzyme from the extreme thermophile Thermus thermophilus HB8 (TtPEPCK) was determined and compared with those of orthologues of known structure from two mesophilic organisms. The protomer structures in these orthologues, which exhibit open/closed interdomain conformations, are similar. Isomorphous crystals of unliganded and ATP-bound TtPEPCK were obtained. The asymmetric units of both crystal forms contain two protomers A and B with closed and open conformations, respectively. ATP was only observed in the interdomain cleft of the closed protomer, suggesting that the induced fit of TtPEPCK agrees with the so-called ;conformational selection' mechanism where ligand binding is not essential for domain closure although its binding leads to the stabilization of the closed state. A bound calcium observed in the N-terminal domain of TtPEPCK probably contributes to the thermal stability. A combination of hydrophobic effects, ion pairs and entropic effects might also contribute to the thermostability of TtPEPCK.
+
The line below this paragraph, {{ABSTRACT_PUBMED_16239727}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 16239727 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_16239727}}
==About this Structure==
==About this Structure==
Line 32: Line 36:
[[Category: Structural genomic]]
[[Category: Structural genomic]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 20:45:18 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 14:26:20 2008''

Revision as of 11:26, 1 July 2008

Image:1j3b.png

Template:STRUCTURE 1j3b

Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8

Template:ABSTRACT PUBMED 16239727

About this Structure

1J3B is a Single protein structure of sequence from Thermus thermophilus. Full crystallographic information is available from OCA.

Reference

Structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8 showing the structural basis of induced fit and thermostability., Sugahara M, Ohshima N, Ukita Y, Sugahara M, Kunishima N, Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1500-7. Epub 2005, Oct 19. PMID:16239727

Page seeded by OCA on Tue Jul 1 14:26:20 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1j3b"
Personal tools