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3rdn

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[[Image:3rdn.jpg|left|200px]]
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[[Image:3rdn.png|left|200px]]
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{{STRUCTURE_3rdn| PDB=3rdn | SCENE= }}
{{STRUCTURE_3rdn| PDB=3rdn | SCENE= }}
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'''NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE'''
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===NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE===
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==Overview==
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Antifreeze proteins (AFPs) have the unique ability to adsorb to ice and inhibit its growth. Many organisms ranging from fish to bacteria use AFPs to retard freezing or lessen the damage incurred upon freezing and thawing. The ice-binding mechanism of the long linear alpha-helical type I AFPs has been attributed to their regularly spaced polar residues matching the ice lattice along a pyramidal plane. In contrast, it is not known how globular antifreeze proteins such as type III AFP that lack repeating ice-binding residues bind to ice. Here we report the 1.25 A crystal structure of recombinant type III AFP (QAE isoform) from eel pout (Macrozoarces americanus), which reveals a remarkably flat amphipathic ice-binding site where five hydrogen-bonding atoms match two ranks of oxygens on the [1010] ice prism plane in the &lt;0001&gt; direction, giving high ice-binding affinity and specificity. This binding site, substantiated by the structures and properties of several ice-binding site mutants, suggests that the AFP occupies a niche in the ice surface in which it covers the basal plane while binding to the prism face.
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(as it appears on PubMed at http://www.pubmed.gov), where 8918883 is the PubMed ID number.
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{{ABSTRACT_PUBMED_8918883}}
==About this Structure==
==About this Structure==
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3RDN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lycodichthys_dearborni Lycodichthys dearborni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RDN OCA].
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3RDN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lycodichthys_dearborni Lycodichthys dearborni]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RDN OCA].
==Reference==
==Reference==
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[[Category: Ice binding protein]]
[[Category: Ice binding protein]]
[[Category: Thermal hysteresis protein]]
[[Category: Thermal hysteresis protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:11:59 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:05:01 2008''

Revision as of 10:05, 3 July 2008

Image:3rdn.png

Template:STRUCTURE 3rdn

NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE

Template:ABSTRACT PUBMED 8918883

About this Structure

3RDN is a Single protein structure of sequence from Lycodichthys dearborni. Full experimental information is available from OCA.

Reference

Structural basis for the binding of a globular antifreeze protein to ice., Jia Z, DeLuca CI, Chao H, Davies PL, Nature. 1996 Nov 21;384(6606):285-8. PMID:8918883

Page seeded by OCA on Thu Jul 3 13:05:01 2008

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