This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2o33

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2o33.gif|left|200px]]
+
{{Seed}}
 +
[[Image:2o33.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2o33| PDB=2o33 | SCENE= }}
{{STRUCTURE_2o33| PDB=2o33 | SCENE= }}
-
'''Solution structure of U2 snRNA stem I from S. cerevisiae'''
+
===Solution structure of U2 snRNA stem I from S. cerevisiae===
-
==Overview==
+
<!--
-
The spliceosome is a dynamic ribonucleoprotein complex responsible for the removal of intron sequences from pre-messenger RNA. The highly conserved 5' end of the U2 small nuclear RNA (snRNA) makes key base-pairing interactions with the intron branch point sequence and U6 snRNA. U2 stem I, a stem-loop located in the 5' region of U2, has been implicated in spliceosome assembly and may modulate the folding of the U2 and U6 snRNAs in the spliceosome active site. Here we present the NMR structures of U2 stem I from human and Saccharomyces cerevisiae. These sequences represent the two major classes of U2 stem I, distinguished by the identity of tandem wobble pairs (UU/UU in yeast and CA/GU in human) and the presence of post-transcriptional modifications (four 2'-O-methyl groups and two pseudouracils in human). The structures reveal that the UU/UU and CA/GU tandem wobble pairs are nearly isosteric. The tandem wobble pairs separate two thermodynamically distinct regions of Watson-Crick base pairs, with the modified nucleotides in human stem I conferring a significant increase in stability. We hypothesize that the separate thermodynamic stabilities of U2 stem I exist to allow the structure to transition through different folded conformations during spliceosome assembly and catalysis.
+
The line below this paragraph, {{ABSTRACT_PUBMED_17242306}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 17242306 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_17242306}}
==About this Structure==
==About this Structure==
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O33 OCA].
+
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O33 OCA].
==Reference==
==Reference==
Line 28: Line 32:
[[Category: U2 snrna]]
[[Category: U2 snrna]]
[[Category: Wobble base-pair]]
[[Category: Wobble base-pair]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 10:15:46 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 15:22:53 2008''

Revision as of 12:22, 27 July 2008

Image:2o33.png

Template:STRUCTURE 2o33

Solution structure of U2 snRNA stem I from S. cerevisiae

Template:ABSTRACT PUBMED 17242306

About this Structure

Full experimental information is available from OCA.

Reference

Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human., Sashital DG, Venditti V, Angers CG, Cornilescu G, Butcher SE, RNA. 2007 Mar;13(3):328-38. Epub 2007 Jan 22. PMID:17242306

Page seeded by OCA on Sun Jul 27 15:22:53 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2o33"
Personal tools