This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2h65

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2h65.gif|left|200px]]
+
{{Seed}}
 +
[[Image:2h65.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2h65| PDB=2h65 | SCENE= }}
{{STRUCTURE_2h65| PDB=2h65 | SCENE= }}
-
'''Crystal strusture of caspase-3 with inhibitor Ac-VDVAD-Cho'''
+
===Crystal strusture of caspase-3 with inhibitor Ac-VDVAD-Cho===
-
==Overview==
+
<!--
-
The molecular basis for the substrate specificity of human caspase-3 has been investigated using peptide analog inhibitors and substrates that vary at the P2, P3, and P5 positions. Crystal structures were determined of caspase-3 complexes with the substrate analogs at resolutions of 1.7 A to 2.3 A. Differences in the interactions of caspase-3 with the analogs are consistent with the Ki values of 1.3 nM, 6.5 nM, and 12.4 nM for Ac-DEVD-Cho, Ac-VDVAD-Cho and Ac-DMQD-Cho, respectively, and relative kcat/Km values of 100%, 37% and 17% for the corresponding peptide substrates. The bound peptide analogs show very similar interactions for the main-chain atoms and the conserved P1 Asp and P4 Asp, while interactions vary for P2 and P3. P2 lies in a hydrophobic S2 groove, consistent with the weaker inhibition of Ac-DMQD-Cho with polar P2 Gln. S3 is a surface hydrophilic site with favorable polar interactions with P3 Glu in Ac-DEVD-Cho. Ac-DMQD-Cho and Ac-VDVAD-Cho have hydrophobic P3 residues that are not optimal in the polar S3 site, consistent with their weaker inhibition. A hydrophobic S5 site was identified for caspase-3, where the side-chains of Phe250 and Phe252 interact with P5 Val of Ac-VDVAD-Cho, and enclose the substrate-binding site by conformational change. The kinetic importance of hydrophobic P5 residues was confirmed by more efficient hydrolysis of caspase-3 substrates Ac-VDVAD-pNA and Ac-LDVAD-pNA compared with Ac-DVAD-pNA. In contrast, caspase-7 showed less efficient hydrolysis of the substrates with P5 Val or Leu compared with Ac-DVAD-pNA. Caspase-3 and caspase-2 share similar hydrophobic S5 sites, while caspases 1, 7, 8 and 9 do not have structurally equivalent hydrophobic residues; these caspases are likely to differ in their selectivity for the P5 position of substrates. The distinct selectivity for P5 will help define the particular substrates and signaling pathways associated with each caspase.
+
The line below this paragraph, {{ABSTRACT_PUBMED_16781734}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 16781734 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_16781734}}
==About this Structure==
==About this Structure==
Line 30: Line 34:
[[Category: Enzyme catalysis]]
[[Category: Enzyme catalysis]]
[[Category: Induced fit]]
[[Category: Induced fit]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 05:54:46 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 19:48:22 2008''

Revision as of 16:48, 27 July 2008

Image:2h65.png

Template:STRUCTURE 2h65

Crystal strusture of caspase-3 with inhibitor Ac-VDVAD-Cho

Template:ABSTRACT PUBMED 16781734

About this Structure

2H65 is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Structural and kinetic analysis of caspase-3 reveals role for s5 binding site in substrate recognition., Fang B, Boross PI, Tozser J, Weber IT, J Mol Biol. 2006 Jul 14;360(3):654-66. Epub 2006 Jun 2. PMID:16781734

Page seeded by OCA on Sun Jul 27 19:48:22 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2h65"
Personal tools