This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1tkd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1tkd.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1tkd.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1tkd| PDB=1tkd | SCENE= }}
{{STRUCTURE_1tkd| PDB=1tkd | SCENE= }}
-
'''T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site'''
+
===T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site===
-
==Overview==
+
<!--
-
Accurate DNA replication involves polymerases with high nucleotide selectivity and proofreading activity. We show here why both fidelity mechanisms fail when normally accurate T7 DNA polymerase bypasses the common oxidative lesion 8-oxo-7, 8-dihydro-2'-deoxyguanosine (8oG). The crystal structure of the polymerase with 8oG templating dC insertion shows that the O8 oxygen is tolerated by strong kinking of the DNA template. A model of a corresponding structure with dATP predicts steric and electrostatic clashes that would reduce but not eliminate insertion of dA. The structure of a postinsertional complex shows 8oG(syn).dA (anti) in a Hoogsteen-like base pair at the 3' terminus, and polymerase interactions with the minor groove surface of the mismatch that mimic those with undamaged, matched base pairs. This explains why translesion synthesis is permitted without proofreading of an 8oG.dA mismatch, thus providing insight into the high mutagenic potential of 8oG.
+
The line below this paragraph, {{ABSTRACT_PUBMED_15297882}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 15297882 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_15297882}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Kunkel, T A.]]
[[Category: Kunkel, T A.]]
[[Category: 8-oxoguanosine dna polymerase]]
[[Category: 8-oxoguanosine dna polymerase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 10:03:25 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 20:54:12 2008''

Revision as of 17:54, 27 July 2008

Image:1tkd.png

Template:STRUCTURE 1tkd

T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site

Template:ABSTRACT PUBMED 15297882

About this Structure

1TKD is a Protein complex structure of sequences from Enterobacteria phage t7 and Escherichia coli. Full crystallographic information is available from OCA.

Reference

Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase., Brieba LG, Eichman BF, Kokoska RJ, Doublie S, Kunkel TA, Ellenberger T, EMBO J. 2004 Sep 1;23(17):3452-61. Epub 2004 Aug 5. PMID:15297882

Page seeded by OCA on Sun Jul 27 20:54:12 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1tkd"
Personal tools