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1r2j

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{{STRUCTURE_1r2j| PDB=1r2j | SCENE= }}
{{STRUCTURE_1r2j| PDB=1r2j | SCENE= }}
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'''FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant'''
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===FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant===
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==Overview==
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Polyketide synthases (PKSs) synthesize the polyketide cores of pharmacologically important natural products such as the immunosuppressants FK520 and FK506. Understanding polyketide biosynthesis at atomic resolution could present new opportunities for chemo-enzymatic synthesis of complex molecules. The crystal structure of FkbI, an enzyme involved in the biosynthesis of the methoxymalonyl extender unit of FK520, was solved to 2.1A with an R(crys) of 24.4%. FkbI has a similar fold to acyl-CoA dehydrogenases. Notwithstanding this similarity, the surface and substrate-binding site of FkbI reveal key differences from other acyl-CoA dehydrogenases, suggesting that FkbI may recognize an acyl-ACP substrate rather than an acyl-CoA substrate. This structural observation coincided the genetic experiment done by Carroll et al. J. Am. Chem. Soc., 124 (2002) 4176. Although an in vitro assay for FkbI remains elusive, the structural basis for the substrate specificity of FkbI is analyzed by a combination of sequence comparison, docking simulations and structural analysis. A biochemical mechanism for the role of FkbI in the biosynthesis of methoxymalonyl-ACP is proposed.
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(as it appears on PubMed at http://www.pubmed.gov), where 14623185 is the PubMed ID number.
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{{ABSTRACT_PUBMED_14623185}}
==About this Structure==
==About this Structure==
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[[Category: Polyketide]]
[[Category: Polyketide]]
[[Category: Polyketide synthase]]
[[Category: Polyketide synthase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 06:59:51 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 03:20:53 2008''

Revision as of 00:20, 28 July 2008

Image:1r2j.png

Template:STRUCTURE 1r2j

FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant

Template:ABSTRACT PUBMED 14623185

About this Structure

1R2J is a Single protein structure of sequence from Streptomyces hygroscopicus. Full crystallographic information is available from OCA.

Reference

Crystal structure of an Acyl-ACP dehydrogenase from the FK520 polyketide biosynthetic pathway: insights into extender unit biosynthesis., Watanabe K, Khosla C, Stroud RM, Tsai SC, J Mol Biol. 2003 Nov 28;334(3):435-44. PMID:14623185

Page seeded by OCA on Mon Jul 28 03:20:53 2008

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