This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qps

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2qps.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:2qps.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2qps| PDB=2qps | SCENE= }}
{{STRUCTURE_2qps| PDB=2qps | SCENE= }}
-
'''"Sugar tongs" mutant Y380A in complex with acarbose'''
+
==="Sugar tongs" mutant Y380A in complex with acarbose===
-
==Overview==
+
<!--
-
Some starch-degrading enzymes accommodate carbohydrates at sites situated at a certain distance from the active site. In the crystal structure of barley alpha-amylase 1, oligosaccharide is thus bound to the 'sugar tongs' site. This site on the non-catalytic domain C in the C-terminal part of the molecule contains a key residue, Tyr380, which has numerous contacts with the oligosaccharide. The mutant enzymes Y380A and Y380M failed to bind to beta-cyclodextrin-Sepharose, a starch-mimic resin used for alpha-amylase affinity purification. The K(d) for beta-cyclodextrin binding to Y380A and Y380M was 1.4 mm compared to 0.20-0.25 mm for the wild-type, S378P and S378T enzymes. The substitution in the S378P enzyme mimics Pro376 in the barley alpha-amylase 2 isozyme, which in spite of its conserved Tyr378 did not bind oligosaccharide at the 'sugar tongs' in the structure. Crystal structures of both wild-type and S378P enzymes, but not the Y380A enzyme, showed binding of the pseudotetrasaccharide acarbose at the 'sugar tongs' site. The 'sugar tongs' site also contributed importantly to the adsorption to starch granules, as Kd = 0.47 mg.mL(-1) for the wild-type enzyme increased to 5.9 mg.mL(-1) for Y380A, which moreover catalyzed the release of soluble oligosaccharides from starch granules with only 10% of the wild-type activity. beta-cyclodextrin both inhibited binding to and suppressed activity on starch granules for wild-type and S378P enzymes, but did not affect these properties of Y380A, reflecting the functional role of Tyr380. In addition, the Y380A enzyme hydrolyzed amylose with reduced multiple attack, emphasizing that the 'sugar tongs' participates in multivalent binding of polysaccharide substrates.
+
The line below this paragraph, {{ABSTRACT_PUBMED_17803687}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 17803687 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_17803687}}
==About this Structure==
==About this Structure==
Line 36: Line 40:
[[Category: Secreted]]
[[Category: Secreted]]
[[Category: Sugar tongs complex]]
[[Category: Sugar tongs complex]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 15:23:01 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 09:37:58 2008''

Revision as of 06:37, 28 July 2008

Image:2qps.png

Template:STRUCTURE 2qps

"Sugar tongs" mutant Y380A in complex with acarbose

Template:ABSTRACT PUBMED 17803687

About this Structure

2QPS is a Single protein structure of sequence from Hordeum vulgare. Full crystallographic information is available from OCA.

Reference

The 'pair of sugar tongs' site on the non-catalytic domain C of barley alpha-amylase participates in substrate binding and activity., Bozonnet S, Jensen MT, Nielsen MM, Aghajari N, Jensen MH, Kramhoft B, Willemoes M, Tranier S, Haser R, Svensson B, FEBS J. 2007 Oct;274(19):5055-67. Epub 2007 Sep 4. PMID:17803687

Page seeded by OCA on Mon Jul 28 09:37:58 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qps"
Personal tools