This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2z55

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2z55.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:2z55.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2z55| PDB=2z55 | SCENE= }}
{{STRUCTURE_2z55| PDB=2z55 | SCENE= }}
-
'''Bacterioruberin in the trimeric structure of archaerhodopsin-2'''
+
===Bacterioruberin in the trimeric structure of archaerhodopsin-2===
-
==Overview==
+
<!--
-
Archaerhodopsin-2 (aR2), a retinal protein-carotenoid complex found in the claret membrane of Halorubrum sp. aus-2, functions as a light-driven proton pump. In this study, the membrane fusion method was utilized to prepare trigonal P321 crystals (a=b=98.2 A, c=56.2 A) and hexagonal P6(3) crystals (a=b=108.8 A, c=220.7 A). The trigonal crystal is made up of stacked membranes in which the aR2 trimers are arranged on a honeycomb lattice. Similar membranous structures are found in the hexagonal crystal, but four membrane layers with different orientations are contained in the unit cell. In these crystals, the carotenoid bacterioruberin [5,32-bis(2-hydroxypropan-2-yl)-2,8,12,16,21,25,29,35-octamethylhexatriaco nta-6,8,10,12,14,16,18,20,22,24,26,28,30-tridecaene-2,35-diol] binds to crevices between the subunits of the trimer. Its polyene chain is inclined from the membrane normal by an angle of about 20 degrees and, on the cytoplasmic side, it is surrounded by helices AB and DE of neighbouring subunits. This peculiar binding mode suggests that bacterioruberin plays a striking structural role for the trimerization of aR2. When compared with the aR2 structure in another crystal form containing no bacterioruberin, the proton release channel takes a more closed conformation in the P321 or P6(3) crystal; i.e., the native conformation of protein is stabilized in the trimeric protein-bacterioruberin complex. Interestingly, most residues participating in the trimerization are not conserved in bacteriorhodopsin, a homologous protein capable of forming a trimeric structure in the absence of bacterioruberin. Despite a large alteration in the amino acid sequence, the shape of the intratrimer hydrophobic space filled by lipids is highly conserved between aR2 and bacteriorhodopsin. Since a transmembrane helix facing this space undergoes a large conformational change during the proton pumping cycle, it is feasible that trimerization is an important strategy to capture special lipid components that are relevant to the protein activity.
+
The line below this paragraph, {{ABSTRACT_PUBMED_18082767}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 18082767 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_18082767}}
==About this Structure==
==About this Structure==
Line 27: Line 31:
[[Category: Retinal protein]]
[[Category: Retinal protein]]
[[Category: Transport protein]]
[[Category: Transport protein]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 19:57:29 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 20:37:42 2008''

Revision as of 17:37, 28 July 2008

Image:2z55.png

Template:STRUCTURE 2z55

Bacterioruberin in the trimeric structure of archaerhodopsin-2

Template:ABSTRACT PUBMED 18082767

About this Structure

2Z55 is a Single protein structure of sequence from Halobacterium sp.. Full crystallographic information is available from OCA.

Reference

Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2., Yoshimura K, Kouyama T, J Mol Biol. 2008 Feb 1;375(5):1267-81. Epub 2007 Nov 22. PMID:18082767

Page seeded by OCA on Mon Jul 28 20:37:42 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2z55"
Personal tools