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1q80

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[[Image:1q80.gif|left|200px]]
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{{STRUCTURE_1q80| PDB=1q80 | SCENE= }}
{{STRUCTURE_1q80| PDB=1q80 | SCENE= }}
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'''Solution structure and dynamics of Nereis sarcoplasmic calcium binding protein'''
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===Solution structure and dynamics of Nereis sarcoplasmic calcium binding protein===
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==Overview==
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The solution structure of Nereis diversicolor sarcoplasmic calcium-binding protein (NSCP) in the calcium-bound form was determined by NMR spectroscopy, distance geometry and simulated annealing. Based on 1859 NOE restraints and 262 angular restraints, 17 structures were generated with a rmsd of 0.87 A from the mean structure. The solution structure, which is highly similar to the structure obtained by X-ray crystallography, includes two open EF-hand domains, which are in close contact through their hydrophobic surfaces. The internal dynamics of the protein backbone were determined by studying amide hydrogen/deuterium exchange rates and 15N nuclear relaxation. The two methods revealed a highly compact and rigid structure, with greatly restricted mobility at the two termini. For most of the amide protons, the free energy of exchange-compatible structural opening is similar to the free energy of structural stability, suggesting that isotope exchange of these protons takes place through global unfolding of the protein. Enhanced conformational flexibility was noted in the unoccupied Ca2+-binding site II, as well as the neighbouring helices. Analysis of the experimental nuclear relaxation and the molecular dynamics simulations give very similar profiles for the backbone generalized order parameter (S2), a parameter related to the amplitude of fast (picosecond to nanosecond) movements of N(H)-H vectors. We also noted a significant correlation between this parameter, the exchange rate, and the crystallographic B factor along the sequence.
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(as it appears on PubMed at http://www.pubmed.gov), where 15819893 is the PubMed ID number.
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{{ABSTRACT_PUBMED_15819893}}
==About this Structure==
==About this Structure==
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1Q80 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neanthes_diversicolor Neanthes diversicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q80 OCA].
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1Q80 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neanthes_diversicolor Neanthes diversicolor]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q80 OCA].
==Reference==
==Reference==
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[[Category: Rabah, G.]]
[[Category: Rabah, G.]]
[[Category: All-alpha]]
[[Category: All-alpha]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 05:58:44 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:37:10 2008''

Revision as of 23:37, 28 July 2008

Image:1q80.png

Template:STRUCTURE 1q80

Solution structure and dynamics of Nereis sarcoplasmic calcium binding protein

Template:ABSTRACT PUBMED 15819893

About this Structure

1Q80 is a Single protein structure of sequence from Neanthes diversicolor. Full experimental information is available from OCA.

Reference

Solution structure and internal dynamics of NSCP, a compact calcium-binding protein., Rabah G, Popescu R, Cox JA, Engelborghs Y, Craescu CT, FEBS J. 2005 Apr;272(8):2022-36. PMID:15819893

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