2pnm

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{{STRUCTURE_2pnm| PDB=2pnm | SCENE= }}
{{STRUCTURE_2pnm| PDB=2pnm | SCENE= }}
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'''Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122'''
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===Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122===
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==Overview==
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Infectious pancreatic necrosis virus (IPNV), an aquatic birnavirus that infects salmonid fish, encodes a large polyprotein (NH(2)-pVP2-VP4-VP3-COOH) that is processed through the proteolytic activity of its own protease, VP4, to release the proteins pVP2 and VP3. pVP2 is further processed to give rise to the capsid protein VP2 and three peptides that are incorporated into the virion. Reported here are two crystal structures of the IPNV VP4 protease solved from two different crystal symmetries. The electron density at the active site in the triclinic crystal form, refined to 2.2-A resolution, reveals the acyl-enzyme complex formed with an internal VP4 cleavage site. The complex was generated using a truncated enzyme in which the general base lysine was substituted. Inside the complex, the nucleophilic Ser(633)Ogamma forms an ester bond with the main-chain carbonyl of the C-terminal residue, Ala(716), of a neighboring VP4. The structure of this substrate-VP4 complex allows us to identify the S1, S3, S5, and S6 substrate binding pockets as well as other substrate-VP4 interactions and therefore provides structural insights into the substrate specificity of this enzyme. The structure from the hexagonal crystal form, refined to 2.3-A resolution, reveals the free-binding site of the protease. Three-dimensional alignment with the VP4 of blotched snakehead virus, another birnavirus, shows that the overall structure of VP4 is conserved despite a low level of sequence identity ( approximately 19%). The structure determinations of IPNV VP4, the first of an acyl-enzyme complex for a Ser/Lys dyad protease, provide insights into the catalytic mechanism and substrate recognition of this type of protease.
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{{ABSTRACT_PUBMED_17553791}}
==About this Structure==
==About this Structure==
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==Reference==
==Reference==
Crystal structure of the VP4 protease from infectious pancreatic necrosis virus reveals the acyl-enzyme complex for an intermolecular self-cleavage reaction., Lee J, Feldman AR, Delmas B, Paetzel M, J Biol Chem. 2007 Aug 24;282(34):24928-37. Epub 2007 Jun 6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17553791 17553791]
Crystal structure of the VP4 protease from infectious pancreatic necrosis virus reveals the acyl-enzyme complex for an intermolecular self-cleavage reaction., Lee J, Feldman AR, Delmas B, Paetzel M, J Biol Chem. 2007 Aug 24;282(34):24928-37. Epub 2007 Jun 6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17553791 17553791]
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Purification, crystallization and preliminary X-ray analysis of truncated and mutant forms of VP4 protease from infectious pancreatic necrosis virus., Lee J, Feldman AR, Chiu E, Chan C, Kim YN, Delmas B, Paetzel M, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Dec 1;62(Pt, 12):1235-8. Epub 2006 Nov 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17142905 17142905]
[[Category: Infectious pancreatic necrosis virus]]
[[Category: Infectious pancreatic necrosis virus]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: Ser/lys dyad]]
[[Category: Ser/lys dyad]]
[[Category: Viral protease]]
[[Category: Viral protease]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:29:27 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:19:52 2008''

Revision as of 01:20, 29 July 2008

Image:2pnm.png

Template:STRUCTURE 2pnm

Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122

Template:ABSTRACT PUBMED 17553791

About this Structure

2PNM is a Single protein structure of sequence from Infectious pancreatic necrosis virus. Full crystallographic information is available from OCA.

Reference

Crystal structure of the VP4 protease from infectious pancreatic necrosis virus reveals the acyl-enzyme complex for an intermolecular self-cleavage reaction., Lee J, Feldman AR, Delmas B, Paetzel M, J Biol Chem. 2007 Aug 24;282(34):24928-37. Epub 2007 Jun 6. PMID:17553791

Purification, crystallization and preliminary X-ray analysis of truncated and mutant forms of VP4 protease from infectious pancreatic necrosis virus., Lee J, Feldman AR, Chiu E, Chan C, Kim YN, Delmas B, Paetzel M, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Dec 1;62(Pt, 12):1235-8. Epub 2006 Nov 30. PMID:17142905

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