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1ney

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{{STRUCTURE_1ney| PDB=1ney | SCENE= }}
{{STRUCTURE_1ney| PDB=1ney | SCENE= }}
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'''Triosephosphate Isomerase in Complex with DHAP'''
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===Triosephosphate Isomerase in Complex with DHAP===
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==Overview==
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In enzyme catalysis, where exquisitely positioned functionality is the sine qua non, atomic coordinates for a Michaelis complex can provide powerful insights into activation of the substrate. We focus here on the initial proton transfer of the isomerization reaction catalyzed by triosephosphate isomerase and present the crystal structure of its Michaelis complex with the substrate dihydroxyacetone phosphate at near-atomic resolution. The active site is highly compact, with unusually short and bifurcated hydrogen bonds for both catalytic Glu-165 and His-95 residues. The carboxylate oxygen of the catalytic base Glu-165 is positioned in an unprecedented close interaction with the ketone and the alpha-hydroxy carbons of the substrate (C em leader O approximately 3.0 A), which is optimal for the proton transfer involving these centers. The electrophile that polarizes the substrate, His-95, has close contacts to the substrate's O1 and O2 (N em leader O &lt; or = 3.0 and 2.6 A, respectively). The substrate is conformationally relaxed in the Michaelis complex: the phosphate group is out of the plane of the ketone group, and the hydroxy and ketone oxygen atoms are not in the cisoid configuration. The epsilon ammonium group of the electrophilic Lys-12 is within hydrogen-bonding distance of the substrate's ketone oxygen, the bridging oxygen, and a terminal phosphate's oxygen, suggesting a role for this residue in both catalysis and in controlling the flexibility of active-site loop.
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(as it appears on PubMed at http://www.pubmed.gov), where 12509510 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12509510}}
==About this Structure==
==About this Structure==
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[[Category: Triosephosphate isomerase]]
[[Category: Triosephosphate isomerase]]
[[Category: Yeast]]
[[Category: Yeast]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 02:27:00 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 05:09:48 2008''

Revision as of 02:09, 29 July 2008

Image:1ney.png

Template:STRUCTURE 1ney

Triosephosphate Isomerase in Complex with DHAP

Template:ABSTRACT PUBMED 12509510

About this Structure

1NEY is a Single protein structure of sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA.

Reference

Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-A resolution., Jogl G, Rozovsky S, McDermott AE, Tong L, Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):50-5. Epub 2002 Dec 30. PMID:12509510

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