1r3z

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{{STRUCTURE_1r3z| PDB=1r3z | SCENE= }}
{{STRUCTURE_1r3z| PDB=1r3z | SCENE= }}
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'''Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers'''
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===Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers===
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==Overview==
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The crystal structures of two alternating octamers d(Gm(5)CGm(5)CGCGC) and d(GCGCGm(5)CGm(5)C) have been determined at 1.7 and 1.9 A resolution with R(work)/R(free) of 16.9/19.6% and 17.9/19.8%, respectively. The two octamers crystallized in the same tetragonal space group P4(3)2(1)2, with unit-cell parameters a = b = 43.0, c = 24.9 A and a = b = 43.1, c = 24.7 A, respectively. Both structures adopt the A-type double helix and the abutting crystal packing. Despite the different positions of the methylated cytosine in the sequence, the two octamers display essentially the same conformation. The close similarity of the two structures indicates that methylation at different positions in a DNA sequence does not affect the helical conformation of the alternating DNA octamer. Investigation of other related crystal structures implies that methylation of cytosine stabilizes the A-type conformation for alternating DNA sequences beginning with a 5'-purine but is beneficial to the Z-type conformation for alternating DNA sequences beginning with a 5'-pyrimidine.
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(as it appears on PubMed at http://www.pubmed.gov), where 14684893 is the PubMed ID number.
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{{ABSTRACT_PUBMED_14684893}}
==About this Structure==
==About this Structure==
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[[Category: Tippin, D.]]
[[Category: Tippin, D.]]
[[Category: Dna]]
[[Category: Dna]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 07:02:48 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:23:17 2008''

Revision as of 03:23, 29 July 2008

Image:1r3z.png

Template:STRUCTURE 1r3z

Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers

Template:ABSTRACT PUBMED 14684893

About this Structure

Full crystallographic information is available from OCA.

Reference

Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers., Shi K, Pan B, Tippin D, Sundaralingam M, Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):61-5. Epub 2003 Dec, 18. PMID:14684893

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