Template:STRUCTURE 1nek
From Proteopedia
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| - | {{ | + | {{StructureD |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1nek, resolution 2.60Å (<scene name='initialview01'>initial scene</scene>) | + | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1nek, resolution 2.60Å (<scene name='initialview01'>initial scene</scene>)}}} |
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene> | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene> | ||
| - | |ACTIVITY= | ||
|GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03494 SQR_TypeC_SdhD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02910 Succ_DH_flav_C], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK08958 sdhA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05329 PRK05329], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03499 SQR_TypeC_SdhC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05950 sdhB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12575 PRK12575]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03494 SQR_TypeC_SdhD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02910 Succ_DH_flav_C], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK08958 sdhA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05329 PRK05329], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03499 SQR_TypeC_SdhC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05950 sdhB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12575 PRK12575]</span> | ||
|RELATEDENTRY=[[1nen|1nen]] | |RELATEDENTRY=[[1nen|1nen]] | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span> | ||
| + | |FUNCTION={{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0050660 | text = FAD binding}}{{GO|id=GO:0016627 | text = oxidoreductase activity, acting on the CH-CH group of donors}}{{GO|id=GO:0000104 | text = succinate dehydrogenase activity}}{{GO|id=GO:0005506 | text = iron ion binding}}{{GO|id=GO:0051539 | text = 4 iron, 4 sulfur cluster binding}}{{GO|id=GO:0051538 | text = 3 iron, 4 sulfur cluster binding}}{{GO|id=GO:0009055 | text = electron carrier activity}}{{GO|id=GO:0051536 | text = iron-sulfur cluster binding}}{{GO|id=GO:0051537 | text = 2 iron, 2 sulfur cluster binding}}{{GO|id=GO:0046872 | text = metal ion binding}} | ||
| + | |PROCESS={{GO|id=GO:0006118 | text = electron transport}}{{GO|id=GO:0006099 | text = tricarboxylic acid cycle}}{{GO|id=GO:0006810 | text = transport}} | ||
| + | |COMPONENT={{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0016021 | text = integral to membrane}} | ||
| + | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB02 1Nekb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB01 1Nekb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001450 Ipr001450], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80427 d1neka2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80428 d1neka3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80426 d1neka1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80429 d1nekb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80430 d1nekb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80431 d1nekc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80432 d1nekd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC41 P0AC41], [http://ca.expasy.org/cgi-bin/niceprot.pl?P07014 P07014], [http://ca.expasy.org/cgi-bin/niceprot.pl?P69054 P69054], [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC44 P0AC44]</span> | ||
}} | }} | ||
