This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zhh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2zhh.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:2zhh.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2zhh| PDB=2zhh | SCENE= }}
{{STRUCTURE_2zhh| PDB=2zhh | SCENE= }}
-
'''Crystal structure of SoxR'''
+
===Crystal structure of SoxR===
-
==Overview==
+
<!--
-
The [2Fe-2S] transcription factor SoxR, a member of the MerR family, functions as a bacterial sensor of oxidative stress such as superoxide and nitric oxide. SoxR is activated by reversible one-electron oxidation of the [2Fe-2S] cluster and then enhances the production of various antioxidant proteins through the soxRS regulon. In the active state, SoxR and other MerR family proteins activate transcription from unique promoters, which have a long 19- or 20-bp spacer between the -35 and -10 operator elements, by untwisting the promoter DNA. Here, we show the crystal structures of SoxR and its complex with the target promoter in the oxidized (active) state. The structures reveal that the [2Fe-2S] cluster of SoxR is completely solvent-exposed and surrounded by an asymmetric environment stabilized by interaction with the other subunit. The asymmetrically charged environment of the [2Fe-2S] cluster probably causes redox-dependent conformational changes of SoxR and the target promoter. Compared with the promoter structures with the 19-bp spacer previously studied, the DNA structure is more sharply bent, by approximately 1 bp, with the two central base pairs holding Watson-Crick base pairs. Comparison of the target promoter sequences of the MerR family indicates that the present DNA structure represents the activated conformation of the target promoter with a 20-bp spacer in the MerR family.
+
The line below this paragraph, {{ABSTRACT_PUBMED_18334645}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 18334645 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_18334645}}
==About this Structure==
==About this Structure==
Line 36: Line 40:
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:12:58 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 07:37:54 2008''

Revision as of 04:37, 29 July 2008

Image:2zhh.png

Template:STRUCTURE 2zhh

Crystal structure of SoxR

Template:ABSTRACT PUBMED 18334645

About this Structure

2ZHH is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA., Watanabe S, Kita A, Kobayashi K, Miki K, Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4121-6. Epub 2008 Mar 11. PMID:18334645

Page seeded by OCA on Tue Jul 29 07:37:54 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zhh"
Personal tools