1ph3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1ph3.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1ph3.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1ph3| PDB=1ph3 | SCENE= }}
{{STRUCTURE_1ph3| PDB=1ph3 | SCENE= }}
-
'''CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG'''
+
===CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG===
-
==Overview==
+
<!--
-
Sequence-specific protein recognition of single-stranded nucleic acids is critical for many fundamental cellular processes, such as DNA replication, DNA repair, transcription, translation, recombination, apoptosis and telomere maintenance. To explore the mechanisms of sequence-specific ssDNA recognition, we determined the crystal structures of 10 different non-cognate ssDNAs complexed with the Oxytricha nova telomere end-binding protein (OnTEBP) and evaluated their corresponding binding affinities (PDB ID codes 1PH1-1PH9 and 1PHJ). The thermodynamic and structural effects of these sequence perturbations could not have been predicted based solely upon the cognate structure. OnTEBP accommodates non-cognate nucleotides by both subtle adjustments and surprisingly large structural rearrangements in the ssDNA. In two complexes containing ssDNA intermediates that occur during telomere extension by telomerase, entire nucleotides are expelled from the complex. Concurrently, the sequence register of the ssDNA shifts to re-establish a more cognate-like pattern. This phenomenon, termed nucleotide shuffling, may be of general importance in protein recognition of single-stranded nucleic acids. This set of structural and thermodynamic data highlights a fundamental difference between protein recognition of ssDNA versus dsDNA.
+
The line below this paragraph, {{ABSTRACT_PUBMED_12912928}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 12912928 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_12912928}}
==About this Structure==
==About this Structure==
Line 32: Line 36:
[[Category: Single strand dna binding protein]]
[[Category: Single strand dna binding protein]]
[[Category: Telomere]]
[[Category: Telomere]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 05:04:56 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:03:31 2008''

Revision as of 09:03, 29 July 2008

Image:1ph3.png

Template:STRUCTURE 1ph3

CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG

Template:ABSTRACT PUBMED 12912928

About this Structure

1PH3 is a Protein complex structure of sequences from Sterkiella nova. Full crystallographic information is available from OCA.

Reference

Nucleotide shuffling and ssDNA recognition in Oxytricha nova telomere end-binding protein complexes., Theobald DL, Schultz SC, EMBO J. 2003 Aug 15;22(16):4314-24. PMID:12912928

Page seeded by OCA on Tue Jul 29 12:03:31 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ph3"
Personal tools