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| - | [[Image:1wvg.gif|left|200px]] | + | {{Seed}} |
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| | {{STRUCTURE_1wvg| PDB=1wvg | SCENE= }} | | {{STRUCTURE_1wvg| PDB=1wvg | SCENE= }} |
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| - | '''Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi'''
| + | ===Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi=== |
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| - | ==Overview==
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| - | Tyvelose is a unique 3,6-dideoxyhexose found in the O antigens of some pathogenic species of Yersinia and Salmonella. It is produced via a complex biochemical pathway that employs CDP-D-glucose as the starting ligand. CDP-D-glucose 4,6-dehydratase catalyzes the first irreversible step in the synthesis of this 3,6-dideoxysugar by converting CDP-D-glucose to CDP-4-keto-6-deoxyglucose via an NAD+ -dependent intramolecular oxidation-reduction reaction. Here, the cloning, protein purification and X-ray crystallographic analysis of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with the substrate analog CDP-D-xylose are described. Each subunit of the tetrameric enzyme folds into two domains. The N-terminal region contains a Rossmann fold and provides the platform for NAD(H) binding. The C-terminal motif is primarily composed of alpha-helices and houses the binding pocket for the CDP portion of the CDP-D-xylose ligand. The xylose moiety extends into the active-site cleft that is located between the two domains. Key residues involved in anchoring the sugar group to the protein include Ser134, Tyr159, Asn197 and Arg208. Strikingly, Ser134 O gamma and Tyr159 O eta sit within 2.9 A of the 4'-hydroxyl group of xylose. Additionally, the side chains of Asp135 and Lys136 are located at 3.5 and 3.2 A, respectively, from C-5 of xylose. In the structurally related dTDP-D-glucose 4,6-dehydratase, the Asp/Lys pair is replaced with an Asp/Glu couple. On the basis of this investigation, it can be speculated that Tyr159 serves as the catalytic base to abstract the 4'-hydroxyl proton from the sugar and that Asp135 and Lys136 play critical roles in the subsequent dehydration step that leads to the final product.
| + | The line below this paragraph, {{ABSTRACT_PUBMED_15805590}}, adds the Publication Abstract to the page |
| | + | (as it appears on PubMed at http://www.pubmed.gov), where 15805590 is the PubMed ID number. |
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| | + | {{ABSTRACT_PUBMED_15805590}} |
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| | ==About this Structure== | | ==About this Structure== |
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| | [[Category: Rossmann fold]] | | [[Category: Rossmann fold]] |
| | [[Category: Short-chain dehydrogenase/reductase]] | | [[Category: Short-chain dehydrogenase/reductase]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 14:11:32 2008'' | + | |
| | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:45:35 2008'' |
Revision as of 10:45, 29 July 2008
Template:STRUCTURE 1wvg
Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi
Template:ABSTRACT PUBMED 15805590
About this Structure
1WVG is a Single protein structure of sequence from Salmonella enterica subsp. enterica serovar typhi. Full crystallographic information is available from OCA.
Reference
Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose., Koropatkin NM, Holden HM, Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):365-73. Epub 2005, Mar 24. PMID:15805590
Page seeded by OCA on Tue Jul 29 13:45:35 2008
