3d3i

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{{STRUCTURE_3d3i| PDB=3d3i | SCENE= }}
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'''Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63'''
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===Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63===
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==Overview==
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Processing alpha-glucosidase I, which is classified into glycosyl hydrolase (GH) family 63, hydrolyzes an oligosaccharide precursor of eukaryotic N-linked glycoproteins. Recently, many bacteria have been reported to possess genes for proteins that are homologous to the GH family 63 glucosidases. In this paper, Escherichia coli K12 YgjK protein, a member of GH family 63, was overexpressed, purified and crystallized using the vapour-diffusion method. Diffraction data were collected to 1.8 A resolution and the crystal was found to belong to the monoclinic space group P2(1), with unit-cell parameters a = 88.5, b = 137.1, c = 60.9 A, beta = 98.1 degrees. The V(M) value was determined to be 2.1 A(3) Da(-1), which corresponds to the presence of two protein molecules in the asymmetric unit.
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==About this Structure==
==About this Structure==
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==Reference==
==Reference==
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Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63., Kurakata Y, Uechi A, Yoshida H, Kamitori S, Sakano Y, Nishikawa A, Tonozuka T, J Mol Biol. 2008 Aug 1;381(1):116-28. Epub 2008 Jun 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18586271 18586271]
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Crystallization and preliminary X-ray analysis of Escherichia coli K12 YgjK protein, a member of glycosyl hydrolase family 63., Tonozuka T, Uechi A, Mizuno M, Ichikawa K, Nishikawa A, Sakano Y, Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1284-5. Epub 2004, Jun 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15213393 15213393]
Crystallization and preliminary X-ray analysis of Escherichia coli K12 YgjK protein, a member of glycosyl hydrolase family 63., Tonozuka T, Uechi A, Mizuno M, Ichikawa K, Nishikawa A, Sakano Y, Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1284-5. Epub 2004, Jun 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15213393 15213393]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Processing alpha-glucosidase]]
[[Category: Processing alpha-glucosidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 13 13:36:28 2008''

Revision as of 10:36, 13 August 2008

Image:3d3i.png

Template:STRUCTURE 3d3i

Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63

Template:ABSTRACT PUBMED 18586271

About this Structure

3D3I is a Single protein structure of sequence from Escherichia coli. This structure supersedes the now removed PDB entry 2ds3. Full crystallographic information is available from OCA.

Reference

Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63., Kurakata Y, Uechi A, Yoshida H, Kamitori S, Sakano Y, Nishikawa A, Tonozuka T, J Mol Biol. 2008 Aug 1;381(1):116-28. Epub 2008 Jun 30. PMID:18586271

Crystallization and preliminary X-ray analysis of Escherichia coli K12 YgjK protein, a member of glycosyl hydrolase family 63., Tonozuka T, Uechi A, Mizuno M, Ichikawa K, Nishikawa A, Sakano Y, Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1284-5. Epub 2004, Jun 22. PMID:15213393

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