Spacefilling representation

From Proteopedia

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Eran Hodis (Talk | contribs)
(New page: {{Stub}} {{STRUCTURE_1dtg| PDB=1dtg | SCENE= Spacefilling_representation/1dtg_spacefill/1 }} Spacefilling representation is one way to represent a 3D structure. In spacefilling repres...)
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Revision as of 18:39, 16 August 2008

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1dtg, resolution 2.40Å ()

Ligands:

Structural annotation:
Resources:	CATH : 1Dtga01, 1Dtga02 InterPro : Ipr001156 Pfam : PF00405 SCOP : d1dtga_ UniProt : P02787

Functional annotation:
Cellular component:	endocytic vesicle endosome extracellular region
Biological process:	transport cellular iron ion homeostasis iron ion transport ion transport
Molecular function:	iron ion binding ferric iron binding metal ion binding

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Spacefilling representation is one way to represent a 3D structure. In spacefilling representation, each atom is depicted as a solid sphere, usually with a radius equal to some interpretation of its atomic radius. Viewing a molecule in spacefilling representation can crudely be thought of as a way to view the space that the molecule occupies.

On the right you see a n-lobe mutant of human transferrin (PDB code: 1dtg) in spacefill representation.